Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013759.1 Corchorus capsularis cultivar CVL-1 contig13780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37208

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326--486
86
1.9
86
94
2
288
45
5
15
33
1.70
421--689
75
3.6
75
92
2
441
40
7
17
34
1.77
333--689
150
2.3
156
86
7
494
42
6
17
33
1.75
1748--1878
67
2.0
66
89
3
201
38
16
14
30
1.89
6516--6579
27
2.3
27
94
2
110
53
7
31
7
1.58
6656--6828
92
1.9
90
89
7
269
15
21
9
53
1.70
8484--8559
33
2.3
33
100
0
152
35
11
5
47
1.63
12190--12736
22
25.4
22
68
12
192
37
16
9
37
1.80
12399--12479
20
3.9
20
77
18
76
34
14
9
40
1.80
12341--12479
63
2.2
64
80
3
154
37
13
8
40
1.76
13012--13047
19
1.9
19
88
5
56
22
2
11
63
1.39
14743--14767
2
12.5
2
100
0
50
52
0
0
48
1.00
14903--14964
19
3.1
20
75
13
65
38
25
8
27
1.84
18645--18686
10
4.3
10
87
3
59
9
0
35
54
1.33
18684--18721
2
19.5
2
89
5
60
52
0
0
47
1.00
25893--25917
2
12.5
2
100
0
50
52
0
0
48
1.00
31467--31502
19
1.9
18
88
5
54
33
22
2
41
1.68
32070--32636
155
3.7
153
79
6
590
32
20
15
31
1.93

Tables:   1

The End!