Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013760.1 Corchorus capsularis cultivar CVL-1 contig13781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66942

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1402--1847
222
2.0
222
99
0
883
28
19
22
30
1.98
15104--15141
11
3.5
11
85
10
51
57
2
0
39
1.12
21368--21407
16
2.5
16
91
0
62
47
10
15
27
1.77
26317--26529
107
2.0
107
93
3
367
29
17
17
35
1.94
29831--29878
24
2.0
24
95
0
87
29
14
37
18
1.91
39912--39958
12
3.9
12
94
0
85
19
59
0
21
1.38
41170--41218
24
2.0
25
84
4
64
32
22
4
40
1.73
50042--50096
24
2.3
24
84
6
67
18
40
16
25
1.91
50380--50432
27
2.0
26
88
3
79
30
41
7
20
1.80
53015--54200
331
3.6
330
79
6
1242
36
16
13
33
1.88
55162--55249
45
2.0
45
97
0
167
25
20
20
34
1.97
55069--55354
153
1.8
155
83
7
384
31
16
19
32
1.94
62939--62987
15
3.2
15
72
16
55
20
16
20
42
1.89
65566--65605
11
3.6
11
90
6
55
52
12
20
15
1.74

Tables:   1

The End!