Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013765.1 Corchorus capsularis cultivar CVL-1 contig13786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19770

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
578--620
21
2.0
21
95
0
77
9
11
25
53
1.67
582--626
21
2.2
21
84
4
56
13
13
22
51
1.75
660--731
36
2.0
36
89
10
112
36
6
23
33
1.82
2611--2688
40
1.9
42
84
5
106
53
3
11
30
1.54
3105--3131
6
4.5
6
100
0
54
55
14
0
29
1.40
4969--5129
46
3.5
46
76
3
135
24
26
32
16
1.96
4980--5092
23
4.9
23
64
12
61
23
25
33
16
1.96
5048--5117
23
3.0
22
72
12
61
20
31
34
14
1.92
4958--5129
92
1.9
92
80
0
200
25
25
32
17
1.97
5391--5430
18
2.4
17
88
12
64
5
12
5
77
1.09
5397--5442
18
2.5
18
86
10
58
8
10
4
76
1.15
10126--10200
33
2.3
32
86
9
98
58
4
12
25
1.51
10126--10211
34
2.6
34
80
9
88
56
6
10
25
1.57
11573--11598
10
2.6
10
100
0
52
23
7
19
50
1.73
12231--12362
38
3.4
37
76
8
138
23
33
25
18
1.97
12577--12657
15
5.2
15
73
8
72
22
28
27
22
1.99
12747--12778
3
10.7
3
100
0
64
31
0
0
68
0.90
12818--12882
29
2.2
29
86
10
89
12
27
32
27
1.92
13001--13075
25
3.0
25
80
7
89
21
33
28
17
1.96
13099--13134
2
18.5
2
94
5
65
50
0
0
50
1.00
14511--14633
36
3.4
36
87
0
165
26
22
30
19
1.98
16676--16717
15
2.7
15
88
3
57
23
9
30
35
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18656--18687
16
2.0
16
93
0
55
46
37
15
0
1.46
18740--18777
15
2.4
17
87
12
55
34
39
18
7
1.80

Tables:   1

The End!