Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013768.1 Corchorus capsularis cultivar CVL-1 contig13789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28875

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62--166
45
2.3
46
78
17
135
62
3
22
10
1.43
76--147
21
3.3
21
67
24
58
66
4
20
8
1.35
887--1248
180
2.0
180
100
0
724
40
14
12
32
1.83
2069--2121
12
4.5
11
86
13
70
7
33
13
45
1.71
3021--3066
11
4.2
11
88
0
65
21
17
19
41
1.90
6240--6290
11
4.6
11
100
0
102
17
35
29
17
1.93
8702--8755
22
2.5
21
77
22
58
44
9
12
33
1.75
8909--9034
22
5.7
21
70
9
81
40
8
15
35
1.78
8909--8985
22
3.5
22
78
8
84
44
7
12
35
1.72
13867--14220
50
7.2
50
84
6
402
22
28
15
33
1.95
13867--14220
99
3.6
98
84
7
434
22
28
15
33
1.95
13870--14378
49
10.4
49
81
5
410
22
28
16
33
1.96
13870--14378
99
5.2
95
79
7
282
22
28
16
33
1.96

Tables:   1

The End!