Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013771.1 Corchorus capsularis cultivar CVL-1 contig13792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16094
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Found at i:187 original size:46 final size:44
Alignment explanation
Indices: 59--203 Score: 161
Period size: 44 Copynumber: 3.2 Consensus size: 44
49 AGTTATTAAT
*
59 AATTTCAT-GAGAAGGTTATCAAAATTCCATAGTGTGGTTACCAA
1 AATTTCATAG-GAAGGTTATCAAAATTTCATAGTGTGGTTACCAA
*
103 AATCTCATACGGAA-GTTATCAAAATTTCATAGTGTGGTTACCAA
1 AATTTCATA-GGAAGGTTATCAAAATTTCATAGTGTGGTTACCAA
* * ***
147 AATTTCATAGGATCAGGTTATTAAAATTTCTTAG-GTTGGTTATTGA
1 AATTTCATAGGA--AGGTTATCAAAATTTCATAGTG-TGGTTACCAA
193 AATTTCATAGG
1 AATTTCATAGG
204 GTGGTTAATT
Statistics
Matches: 87, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 44 0.51
45 5 0.06
46 35 0.40
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (44 bp):
AATTTCATAGGAAGGTTATCAAAATTTCATAGTGTGGTTACCAA
Found at i:208 original size:22 final size:22
Alignment explanation
Indices: 50--210 Score: 108
Period size: 22 Copynumber: 7.2 Consensus size: 22
40 TCATAAGATA
**
50 GTTATTAATAATTTCAT-GAGAAG
1 GTTATTAA-AATTTCATAG-GGTG
* * *
73 GTTATCAAAATTCCATAGTGTG
1 GTTATTAAAATTTCATAGGGTG
** * * **
95 GTTACCAAAATCTCATACGGAA
1 GTTATTAAAATTTCATAGGGTG
* *
117 GTTATCAAAATTTCATAGTGTG
1 GTTATTAAAATTTCATAGGGTG
** *
139 GTTACCAAAATTTCATAGGATCAG
1 GTTATTAAAATTTCATAGGGT--G
* *
163 GTTATTAAAATTTCTTAGGTTG
1 GTTATTAAAATTTCATAGGGTG
*
185 GTTATTGAAATTTCATAGGGTG
1 GTTATTAAAATTTCATAGGGTG
207 GTTA
1 GTTA
211 ATTATCACAA
Statistics
Matches: 107, Mismatches: 28, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
22 81 0.76
23 8 0.07
24 18 0.17
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.37
Consensus pattern (22 bp):
GTTATTAAAATTTCATAGGGTG
Found at i:292 original size:22 final size:21
Alignment explanation
Indices: 246--359 Score: 77
Period size: 22 Copynumber: 5.2 Consensus size: 21
236 ATCAAAGAGA
* * *
246 TTATCAAAATGTCATAGCGATG
1 TTAT-AAAATTTCATAGTGAGG
*
268 TTATAAGAATTTCATAGTGTGG
1 TTATAA-AATTTCATAGTGAGG
*
290 TTAACAAAATTTCATTAG-GAGG
1 TT-ATAAAATTTCA-TAGTGAGG
* * *
312 TTACTAATATTTCATGGGGAGG
1 TTA-TAAAATTTCATAGTGAGG
* *
334 TTATCAAAATTTTATAGTGTGG
1 TTAT-AAAATTTCATAGTGAGG
356 TTAT
1 TTAT
360 GAAGCTTATA
Statistics
Matches: 72, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
21 6 0.08
22 60 0.83
23 6 0.08
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (21 bp):
TTATAAAATTTCATAGTGAGG
Found at i:549 original size:44 final size:44
Alignment explanation
Indices: 456--646 Score: 126
Period size: 44 Copynumber: 4.4 Consensus size: 44
446 ATAGAGATCA
* *
456 GATTATCAAAATTT-ATAG-GAAGATTATCAAAATTTCACAGT-AT-T
1 GATTATCAAAATTTCAAAGAG-AGGTTATCAAAA-TT-ACA-TAATGT
* *
500 G-TTATCAAAATTTGAAAGCGAGGTTATCAAAATTACATAATGT
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTACATAATGT
* * * * * ** * *
543 GATTATCAGAATTTCATAGAGGGGTCAACAAAATTTTATAAAGA
1 GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTACATAATGT
* * * *
587 GGTTATCAAAATTTCATAA-AGAGGTTATCAAATTTTCAAAATGT
1 GATTATCAAAATTTCA-AAGAGAGGTTATCAAAATTACATAATGT
631 GATTA-CAAAAATTTCA
1 GATTATC-AAAATTTCA
647 TAGTGGTATT
Statistics
Matches: 115, Mismatches: 25, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
43 17 0.15
44 90 0.78
45 2 0.02
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (44 bp):
GATTATCAAAATTTCAAAGAGAGGTTATCAAAATTACATAATGT
Found at i:612 original size:22 final size:22
Alignment explanation
Indices: 378--624 Score: 118
Period size: 22 Copynumber: 11.3 Consensus size: 22
368 TAAAAGTCTC
*
378 AATTTCATAAAGA-G-TACCAA
1 AATTTCATAAAGAGGTTATCAA
* *
398 AATTTGATAGA-AGGTTATC-A
1 AATTTCATAAAGAGGTTATCAA
* * * * **
418 AATCTCATAGAGTGATTATTGA
1 AATTTCATAAAGAGGTTATCAA
* *
440 AATTTCATAGAGATCAGATTATCAA
1 AATTTCATA-A-A-GAGGTTATCAA
465 AATTT-ATAGGAAGA--TTATCAA
1 AATTTCATA--AAGAGGTTATCAA
* *
486 AATTTC--ACAGTATTGTTATCAA
1 AATTTCATAAAG-A-GGTTATCAA
* *
508 AATTTGA-AAGCGAGGTTATCAA
1 AATTTCATAA-AGAGGTTATCAA
* * * * *
530 AATTACATAATGTGATTATCAG
1 AATTTCATAAAGAGGTTATCAA
* * * *
552 AATTTCATAGAGGGGTCAACAA
1 AATTTCATAAAGAGGTTATCAA
*
574 AATTTTATAAAGAGGTTATCAA
1 AATTTCATAAAGAGGTTATCAA
596 AATTTCATAAAGAGGTTATCAA
1 AATTTCATAAAGAGGTTATCAA
*
618 ATTTTCA
1 AATTTCA
625 AAATGTGATT
Statistics
Matches: 170, Mismatches: 41, Indels: 30
0.71 0.17 0.12
Matches are distributed among these distances:
18 2 0.01
19 2 0.01
20 21 0.12
21 20 0.12
22 100 0.59
23 5 0.03
24 6 0.04
25 14 0.08
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (22 bp):
AATTTCATAAAGAGGTTATCAA
Found at i:749 original size:20 final size:20
Alignment explanation
Indices: 724--762 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
714 CTTTTATTAT
724 GGAGGATATCAAAATTTCAG
1 GGAGGATATCAAAATTTCAG
744 GGAGGATATCAAAATTTCA
1 GGAGGATATCAAAATTTCA
763 TAGTTTAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (20 bp):
GGAGGATATCAAAATTTCAG
Found at i:948 original size:24 final size:22
Alignment explanation
Indices: 698--993 Score: 101
Period size: 22 Copynumber: 13.6 Consensus size: 22
688 GTTATCAAAT
* * *
698 TAGGAAGGTTATTAAACTTTTA
1 TAGGGAGGTTATCAAAATTTTA
* *
720 TTATGGAGGATATCAAAA-TTT-
1 -TAGGGAGGTTATCAAAATTTTA
* * *
741 CAGGGAGGATATCAAAATTTCA
1 TAGGGAGGTTATCAAAATTTTA
** *
763 TAGTTTA-GTTTTCAAAATTTTA
1 TAG-GGAGGTTATCAAAATTTTA
* **
785 TA-AGAGGGTTATCAAAATTTCG
1 TAGGGA-GGTTATCAAAATTTTA
* * * * *
807 TA-GTATGTAGATCAAAATATCA
1 TAGGGAGGT-TATCAAAATTTTA
* * *
829 TAGGGAGATTAACAAAATTTCA
1 TAGGGAGGTTATCAAAATTTTA
** ** *
851 TAATGAGGTTATCAAAAAATCA
1 TAGGGAGGTTATCAAAATTTTA
*
873 TAGGAAGGTTATCAAAA--TT-
1 TAGGGAGGTTATCAAAATTTTA
* * *
892 T--GTA-GTTATCAAGATTTCA
1 TAGGGAGGTTATCAAAATTTTA
* * *
911 TAAGAAAGTTATCAAAATTTTAA
1 TAGGGAGGTTATCAAAATTTT-A
*
934 TAGGGAGGTTCATCAAACTTTTA
1 TAGGGAGGTT-ATCAAAATTTTA
* * *
957 TAGGAAGATTTATCAAAATTTCA
1 TAGGGAG-GTTATCAAAATTTTA
*
980 TAGCGAGGTTATCA
1 TAGGGAGGTTATCA
994 CACTTTCATG
Statistics
Matches: 199, Mismatches: 58, Indels: 33
0.69 0.20 0.11
Matches are distributed among these distances:
16 9 0.05
17 2 0.01
18 1 0.01
19 2 0.01
20 17 0.09
21 6 0.03
22 104 0.52
23 46 0.23
24 12 0.06
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.34
Consensus pattern (22 bp):
TAGGGAGGTTATCAAAATTTTA
Found at i:971 original size:23 final size:23
Alignment explanation
Indices: 897--982 Score: 75
Period size: 23 Copynumber: 3.7 Consensus size: 23
887 AAATTTGTAG
* * * *
897 TTATCAAGATTTCATAAGAA-AG
1 TTATCAAAATTTTATAGGAAGAT
* *
919 TTATCAAAATTTTAATAGGGAGGT
1 TTATCAAAATTTT-ATAGGAAGAT
* *
943 TCATCAAACTTTTATAGGAAGAT
1 TTATCAAAATTTTATAGGAAGAT
*
966 TTATCAAAATTTCATAG
1 TTATCAAAATTTTATAG
983 CGAGGTTATC
Statistics
Matches: 49, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
22 11 0.22
23 27 0.55
24 11 0.22
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (23 bp):
TTATCAAAATTTTATAGGAAGAT
Found at i:1022 original size:22 final size:21
Alignment explanation
Indices: 750--1023 Score: 80
Period size: 22 Copynumber: 12.6 Consensus size: 21
740 TCAGGGAGGA
**
750 TATCAAAATTTCATAGTTTAGT
1 TATCAAAATTTCATAG-CGAGT
* * * *
772 TTTCAAAATTTTATAAGAGGGT
1 TATCAAAATTTCAT-AGCGAGT
* *
794 TATCAAAATTTCGTAG-TATGT
1 TATCAAAATTTCATAGCGA-GT
* * *
815 AGATCAAAATATCATAGGGAGAT
1 -TATCAAAATTTCATAGCGAG-T
* **
838 TAACAAAATTTCATAATGAGGT
1 TATCAAAATTTCATAGCGA-GT
**
860 TATCAAAAAATCATAG-GAAGGT
1 TATCAAAATTTCATAGCG-A-GT
*
882 TATCAAAA-TT--T-G-TAGT
1 TATCAAAATTTCATAGCGAGT
* **
898 TATCAAGATTTCATAAGAAAGT
1 TATCAAAATTTCAT-AGCGAGT
* *
920 TATCAAAATTTTAATAGGGAGGT
1 TATCAAAA-TTTCATAGCGA-GT
* *
943 TCATCAAACTTTTATAG-GAAGATT
1 T-ATCAAAATTTCATAGCG-AG--T
967 TATCAAAATTTCATAGCGAGGT
1 TATCAAAATTTCATAGCGA-GT
* * *
989 TATCACACTTTCATGATGTGA-T
1 TATCAAAATTTCAT-A-GCGAGT
1011 TATCAAAATTTCA
1 TATCAAAATTTCA
1024 GAGTGTAATT
Statistics
Matches: 189, Mismatches: 40, Indels: 46
0.69 0.15 0.17
Matches are distributed among these distances:
16 9 0.05
17 3 0.02
18 1 0.01
19 2 0.01
21 7 0.04
22 118 0.62
23 36 0.19
24 13 0.07
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (21 bp):
TATCAAAATTTCATAGCGAGT
Found at i:1034 original size:22 final size:22
Alignment explanation
Indices: 966--1034 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
956 ATAGGAAGAT
* * *
966 TTATCAAAATTTCATAGCG-AGG
1 TTATCAAAATTTCAGAGTGTA-A
* * *
988 TTATCACACTTTCATGA-TGTGA
1 TTATCAAAATTTCA-GAGTGTAA
1010 TTATCAAAATTTCAGAGTGTAA
1 TTATCAAAATTTCAGAGTGTAA
1032 TTA
1 TTA
1035 CTAACAATTC
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
21 2 0.06
22 32 0.91
23 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (22 bp):
TTATCAAAATTTCAGAGTGTAA
Found at i:1090 original size:22 final size:21
Alignment explanation
Indices: 1060--1136 Score: 55
Period size: 22 Copynumber: 3.5 Consensus size: 21
1050 TAGGTTTTTA
1060 AATATTCATAACGTGGTTATC
1 AATATTCATAACGTGGTTATC
** *
1081 AATATATCATATGGAGGTTATC
1 AATAT-TCATAACGTGGTTATC
* **
1103 AACATCTCATAGTGTTGGTTATC
1 AATAT-TCATAACG-TGGTTATC
*
1126 AAAATTTCATA
1 AATA-TTCATA
1137 TTGAAATCTT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
21 5 0.11
22 23 0.52
23 15 0.34
24 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (21 bp):
AATATTCATAACGTGGTTATC
Found at i:1126 original size:23 final size:22
Alignment explanation
Indices: 1072--1137 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
1062 TATTCATAAC
*
1072 GTGGTTATCAATATATCATATG
1 GTGGTTATCAAAATATCATATG
* * *
1094 GAGGTTATCAACATCTCATAGTG
1 GTGGTTATCAAAATATCATA-TG
* *
1117 TTGGTTATCAAAATTTCATAT
1 GTGGTTATCAAAATATCATAT
1138 TGAAATCTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (22 bp):
GTGGTTATCAAAATATCATATG
Found at i:12246 original size:19 final size:19
Alignment explanation
Indices: 12209--12246 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
12199 AGACCATTGG
*
12209 TTAATCATTATTAATGAAC
1 TTAATCATCATTAATGAAC
12228 TTAATTCATCATTAA-GAAC
1 TTAA-TCATCATTAATGAAC
12247 ACATTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.42, C:0.13, G:0.05, T:0.39
Consensus pattern (19 bp):
TTAATCATCATTAATGAAC
Found at i:13717 original size:14 final size:14
Alignment explanation
Indices: 13700--13738 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
13690 TTCGAAAAAA
*
13700 ATTTCAAGAAAATG
1 ATTTCAAAAAAATG
*
13714 ATTTAAAAAAAATG
1 ATTTCAAAAAAATG
13728 ACTTTCAAAAA
1 A-TTTCAAAAA
13739 TGAGTTTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (14 bp):
ATTTCAAAAAAATG
Found at i:13759 original size:12 final size:14
Alignment explanation
Indices: 13721--13760 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
13711 ATGATTTAAA
*
13721 AAAAATGA-CTTTC
1 AAAAATGAGTTTTC
13734 AAAAATGAGTTTTC
1 AAAAATGAGTTTTC
13748 AAAAA-G-GTTTTC
1 AAAAATGAGTTTTC
13760 A
1 A
13761 GTTTTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 7 0.28
13 9 0.36
14 9 0.36
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (14 bp):
AAAAATGAGTTTTC
Found at i:14424 original size:16 final size:16
Alignment explanation
Indices: 14403--14447 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
14393 CTAAAAGGAA
14403 AAAAAAAAAAGAAAGC
1 AAAAAAAAAAGAAAGC
*
14419 AAAAAAAAAAG--AGG
1 AAAAAAAAAAGAAAGC
14433 AAAAAAGAAAAGAAA
1 AAAAAA-AAAAGAAA
14448 AATCAAAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 8 0.32
15 5 0.20
16 11 0.44
17 1 0.04
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAAAGC
Found at i:15566 original size:37 final size:37
Alignment explanation
Indices: 15523--16094 Score: 600
Period size: 37 Copynumber: 15.4 Consensus size: 37
15513 TCAAGATTTT
* *
15523 TGTTTAAGTGTCTTATCAAATCCTTATTTAAGGTCCC
1 TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
* * * * * *
15560 TATTTAAGTGT-TTCATGAAAATCCTTGTTCAAGATCCA
1 TGTTTAGGTGTCTT-AT-CAAATCCTTGTTTAAGGTCCC
* * * * *
15598 TGTTTAGGTTTCTTGTCAAATCCATGTTTAAGATTCC
1 TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
* *
15635 TGTTTAGGTTTCTTATTAAATCCTTGTTTAAGGTCCC
1 TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
** * *
15672 TGTTTAGGTGTCTCGTCAAAAT-CTTGTTTAAGATTCC
1 TGTTTAGGTGTCTTATC-AAATCCTTGTTTAAGGTCCC
* *
15709 TGTTTAGATTTCTTATCAAATCCTTGTTTAAGGTCCC
1 TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
* * * *
15746 TGTTTAAGTGTCTCATCAAAAT-CTTGTTTAAGATTCC
1 TGTTTAGGTGTCTTATC-AAATCCTTGTTTAAGGTCCC
*
15783 TGTTTAGGTTTCTTATCAAATCCTTGTTTAAGGTCCC
1 TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
* * *
15820 TGTTTAGATGTCTCATCAAAAT-CTTGTTTAAGGTTCC
1 TGTTTAGGTGTCTTATC-AAATCCTTGTTTAAGGTCCC
* *
15857 TGTTTAGATTTCTTATCAAATCCTTGTTTAAGGTCCC
1 TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
* * * *
15894 TGTTTAGGTGTCTCATCAAAAT-CTTGTTTAAGATTCT
1 TGTTTAGGTGTCTTATC-AAATCCTTGTTTAAGGTCCC
*
15931 TGTTTAGGTTTCTTATCAAATCCTTGTTTAAGGTCCC
1 TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
* * *
15968 TGTTTAGGTGTCTCATCAAAAT-CTTGTTTAAGATTCC
1 TGTTTAGGTGTCTTATC-AAATCCTTGTTTAAGGTCCC
* * *
16005 TGTTTAGGTTTCTTATCAAATCCTTGTTTAACGTCTC
1 TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
* * * *
16042 TGTTTAGGTGTCTCATCAAAAT-CTTGTTCAAGATTCC
1 TGTTTAGGTGTCTTATC-AAATCCTTGTTTAAGGTCCC
*
16079 TGTTTAGGTTTCTTAT
1 TGTTTAGGTGTCTTAT
Statistics
Matches: 441, Mismatches: 80, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
36 22 0.05
37 368 0.83
38 49 0.11
39 2 0.00
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.45
Consensus pattern (37 bp):
TGTTTAGGTGTCTTATCAAATCCTTGTTTAAGGTCCC
Found at i:15678 original size:74 final size:74
Alignment explanation
Indices: 15578--16094 Score: 856
Period size: 74 Copynumber: 7.0 Consensus size: 74
15568 TGTTTCATGA
* * * * ** *
15578 AAATCCTTGTTCAAGATCCATGTTTAGGTTTCTTGTC-AAATCCATGTTTAAGATTCCTGTTTAG
1 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAAT-CTTGTTTAAGATTCCTGTTTAG
*
15642 GTTTCTTATT
65 GTTTCTTATC
* *
15652 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCGTCAAAATCTTGTTTAAGATTCCTGTTTAGA
1 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
15717 TTTCTTATC
66 TTTCTTATC
*
15726 AAATCCTTGTTTAAGGTCCCTGTTTAAGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
1 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
15791 TTTCTTATC
66 TTTCTTATC
* * *
15800 AAATCCTTGTTTAAGGTCCCTGTTTAGATGTCTCATCAAAATCTTGTTTAAGGTTCCTGTTTAGA
1 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
15865 TTTCTTATC
66 TTTCTTATC
*
15874 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCTTGTTTAGG
1 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
15939 TTTCTTATC
66 TTTCTTATC
15948 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
1 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
16013 TTTCTTATC
66 TTTCTTATC
* * *
16022 AAATCCTTGTTTAACGTCTCTGTTTAGGTGTCTCATCAAAATCTTGTTCAAGATTCCTGTTTAGG
1 AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
16087 TTTCTTAT
66 TTTCTTAT
Statistics
Matches: 419, Mismatches: 23, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
74 415 0.99
75 4 0.01
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.45
Consensus pattern (74 bp):
AAATCCTTGTTTAAGGTCCCTGTTTAGGTGTCTCATCAAAATCTTGTTTAAGATTCCTGTTTAGG
TTTCTTATC
Done.