Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013773.1 Corchorus capsularis cultivar CVL-1 contig13794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59455

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1926--1974
10
4.9
10
92
0
80
40
4
30
24
1.74
1924--1974
20
2.5
20
100
0
102
39
3
29
27
1.74
8677--9123
165
2.6
167
85
4
592
31
8
34
25
1.85
11320--11349
11
2.6
12
94
5
53
13
0
3
83
0.77
25993--26019
1
27.0
1
100
0
54
100
0
0
0
0.00
34549--34588
17
2.2
18
86
8
55
35
12
12
40
1.81
38411--38488
25
3.4
23
71
23
67
6
37
0
56
1.25
38428--38468
18
2.3
18
86
0
55
2
41
0
56
1.13
38782--38828
15
3.2
14
88
8
67
27
17
17
38
1.91
39447--39558
25
4.6
25
75
10
79
10
32
0
56
1.40
39835--39877
15
2.9
14
83
10
59
37
11
13
37
1.82
45089--45286
107
1.9
107
96
0
369
46
17
21
14
1.83
46832--46859
1
28.0
1
100
0
56
0
0
0
100
0.00
48823--48924
50
2.0
50
94
0
177
24
19
16
39
1.92
48872--49092
89
2.5
89
77
7
198
32
18
14
35
1.90
48945--49399
232
2.0
234
89
0
707
37
18
14
29
1.90
50013--50056
2
22.0
2
100
0
88
50
0
50
0
1.00
54222--54344
61
2.0
60
96
1
228
34
28
12
25
1.92
56673--56698
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!