Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013774.1 Corchorus capsularis cultivar CVL-1 contig13795, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82322

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
678--793
57
2.0
57
91
0
187
29
12
21
36
1.91
2242--2268
2
13.5
2
100
0
54
51
0
0
48
1.00
4745--4934
101
1.9
97
85
8
258
38
28
14
17
1.90
8201--8277
29
2.6
29
75
6
75
37
16
28
16
1.91
11963--12002
1
40.0
1
94
0
62
95
0
5
0
0.29
20436--20540
31
3.2
31
82
8
111
28
15
15
40
1.87
20438--20510
37
2.0
37
91
0
119
30
10
15
43
1.80
20486--20547
31
2.0
31
93
0
106
27
20
16
35
1.94
20534--20574
20
2.0
20
100
0
82
24
29
17
29
1.97
20587--20658
31
2.3
31
90
0
108
33
16
23
26
1.96
23023--23056
3
11.7
3
93
6
61
0
29
0
70
0.87
28272--28372
38
2.7
38
100
0
202
35
20
4
38
1.75
33424--33501
38
2.1
38
97
0
147
35
6
23
34
1.80
39771--39833
27
2.4
27
94
2
110
9
7
14
68
1.39
57496--57596
31
3.3
31
71
10
109
35
18
19
25
1.95
57435--57596
60
2.7
60
85
1
200
35
16
19
29
1.93
57627--57850
31
7.5
31
72
17
179
26
19
18
35
1.95
57628--57846
60
3.7
60
84
4
259
26
19
17
36
1.94
57625--57846
117
1.9
120
86
6
328
26
19
18
35
1.95
58370--58495
62
2.0
62
96
0
234
36
24
11
27
1.89
62398--62442
23
1.9
23
82
13
56
22
26
8
42
1.83
81340--81379
21
1.9
21
85
10
55
25
25
10
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81546--81651
32
3.3
32
94
0
185
10
48
34
6
1.64
81546--81663
32
3.7
32
93
0
173
9
45
37
7
1.65
81640--81748
34
3.3
34
84
3
107
16
32
35
15
1.90
81622--81760
33
4.2
34
79
3
144
12
32
38
15
1.86

Tables:   1

The End!