Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013775.1 Corchorus capsularis cultivar CVL-1 contig13796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72318

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
403--474
31
2.3
31
97
0
135
43
8
19
29
1.80
528--584
29
2.0
29
100
0
114
38
3
12
45
1.59
2576--2623
22
2.2
21
78
7
51
31
10
8
50
1.66
2746--2806
22
2.7
23
82
2
70
40
16
11
31
1.84
2721--2806
45
1.9
45
83
4
111
39
17
10
32
1.84
2841--2909
22
3.1
22
89
0
102
37
14
11
36
1.83
2854--2944
23
4.0
22
82
1
83
39
14
8
37
1.77
2971--3132
22
7.5
22
72
9
118
34
14
8
41
1.77
3213--3467
22
11.6
22
70
12
123
33
14
9
42
1.77
3490--3628
22
6.4
21
71
16
88
36
17
8
36
1.81
3530--3581
21
2.5
20
75
12
50
36
17
9
36
1.82
3718--3774
22
2.6
22
94
0
96
33
14
15
36
1.88
3718--3793
22
3.5
22
85
3
91
35
15
13
35
1.87
4016--4053
19
2.0
20
85
15
53
63
2
5
28
1.30
5862--5941
40
2.0
40
90
0
124
36
15
5
43
1.68
28794--29039
130
1.9
133
91
2
408
49
13
12
25
1.76
29295--29322
2
14.0
2
100
0
56
50
0
0
50
1.00
30055--30185
59
2.3
57
89
5
192
17
23
3
55
1.56
30215--30310
46
2.1
46
100
0
192
45
6
6
41
1.54
31140--31207
33
2.1
33
97
0
127
44
16
11
27
1.82
32954--33070
31
3.8
31
85
1
164
39
35
10
15
1.81
32954--33073
62
2.0
61
91
1
195
39
35
10
15
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33540--33655
36
3.3
34
82
10
135
22
32
22
22
1.98
34207--34294
31
2.8
31
91
0
149
36
37
12
13
1.83
36993--37093
45
2.3
44
86
3
139
33
15
9
40
1.81
36859--37244
22
17.8
22
69
14
101
34
17
9
38
1.82
37529--37579
26
2.0
26
92
0
84
54
7
9
27
1.60
37708--37816
27
4.3
27
72
19
92
44
1
8
44
1.44
37868--37902
2
17.5
2
93
0
61
45
2
0
51
1.16
42418--42456
19
2.1
19
100
0
78
12
15
30
41
1.85
43182--44226
347
3.0
349
85
2
1375
31
18
16
33
1.93
49284--49345
6
11.0
6
78
15
53
0
25
1
72
0.94
49286--49316
15
2.1
15
93
0
53
0
22
0
77
0.77
49286--49348
21
2.9
21
86
13
92
0
22
1
76
0.88
49273--49354
27
3.0
27
80
8
85
1
23
1
74
0.96
49286--49349
23
2.9
22
88
11
96
0
21
1
76
0.87
49292--49338
17
2.9
16
82
14
53
0
19
2
78
0.85
49273--49352
13
5.8
13
71
12
52
1
23
1
73
0.97
49286--49356
21
3.4
19
81
16
70
0
22
1
76
0.87
51323--51982
180
3.7
178
75
7
471
41
15
12
30
1.84
51421--51981
180
3.1
177
76
8
483
40
15
12
30
1.85
59373--59409
19
1.9
19
94
0
65
40
13
10
35
1.80
59608--59653
2
24.0
2
79
16
53
52
2
0
45
1.13
59608--59661
24
2.3
23
84
6
65
50
3
0
46
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59608--59653
24
1.9
24
90
0
74
52
2
0
45
1.13
64100--64169
29
2.4
29
85
2
86
41
28
10
20
1.84
70644--70692
23
2.1
23
84
0
62
36
4
0
59
1.17
71068--71101
16
2.2
16
89
5
52
8
14
35
41
1.77
71725--71768
2
22.0
2
95
0
79
50
2
0
47
1.13

Tables:   1

The End!