genome.fa.s13776.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013776.1 Corchorus capsularis cultivar CVL-1 contig13797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80321

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--43	2	21.5	2	100	0	86	51	0	0	48	1.00
4129--4158	1	30.0	1	100	0	60	100	0	0	0	0.00
9615--9802	94	2.0	94	97	0	358	49	14	5	30	1.67
9776--9830	28	2.0	28	100	0	110	47	7	7	38	1.59
9682--9923	121	2.0	122	95	2	443	48	13	5	32	1.66
12385--12409	13	1.9	13	100	0	50	16	8	24	52	1.70
20458--20511	21	2.5	23	84	9	62	33	12	7	46	1.70
20470--20510	21	2.0	21	100	0	82	24	17	9	48	1.76
30587--30655	34	2.0	34	91	0	111	47	18	13	20	1.81
32102--32148	24	2.0	23	84	12	60	36	17	31	14	1.90
32664--32777	57	2.0	57	98	0	219	41	14	14	30	1.85
34348--34471	62	2.0	61	98	1	239	30	8	8	53	1.59
38092--38134	15	2.9	15	73	13	52	2	9	9	79	1.03
38262--38334	30	2.4	31	81	2	85	38	16	15	30	1.89
38463--38546	32	2.6	32	84	3	116	16	10	35	36	1.84
38459--38536	16	4.9	16	67	10	61	14	11	35	38	1.82
38747--38806	16	3.7	16	80	4	66	11	11	21	55	1.68
38734--38813	33	2.5	32	81	4	106	8	12	27	51	1.69
39032--39200	88	1.9	90	91	4	281	34	13	9	42	1.76
41967--42195	110	2.1	109	79	4	246	12	38	37	10	1.79
43143--43176	17	2.0	17	100	0	68	41	0	11	47	1.40
43859--44337	114	4.2	114	83	3	545	37	15	15	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44238--44432	96	2.0	94	82	8	234	37	14	14	32	1.88
48793--48831	17	2.3	17	90	0	60	30	23	10	35	1.88
49084--49151	26	2.6	27	83	6	95	38	23	19	19	1.93
49084--49163	26	3.1	25	78	7	88	37	23	20	18	1.94
49240--49296	29	2.0	29	93	3	98	54	21	3	21	1.59
52415--52450	3	13.0	3	83	16	51	36	0	0	63	0.94
52413--52447	8	4.4	8	100	0	70	37	0	0	62	0.95
52896--53080	90	2.1	90	95	0	334	20	5	51	23	1.67
54721--54796	30	2.6	27	76	17	71	11	0	63	25	1.28
54830--54901	24	3.2	24	66	28	68	16	0	51	31	1.45
54824--54921	42	2.3	42	91	0	160	16	0	56	27	1.41
54866--54966	30	3.4	30	76	0	121	12	0	58	28	1.35
54824--54935	42	2.7	42	85	2	127	14	0	57	28	1.38
55951--55995	3	14.7	3	95	4	81	33	0	0	66	0.92
56263--56325	28	2.2	28	88	0	90	31	17	3	47	1.63
64506--64633	27	4.8	26	84	12	156	57	7	20	14	1.60
64506--64633	53	2.4	53	85	12	158	57	7	20	14	1.60
64547--64595	16	3.4	16	73	26	63	57	8	20	14	1.63
64744--64825	7	11.9	7	68	12	53	57	2	21	18	1.52
64738--64831	21	4.8	20	73	21	76	56	3	22	18	1.55
64745--64864	35	3.5	34	81	6	152	56	3	22	17	1.55
64935--65164	22	10.9	21	78	9	220	53	4	20	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65062--65303	7	34.0	7	65	12	73	56	2	20	19	1.55
65061--65099	15	2.7	15	80	4	53	61	2	15	20	1.45
64935--65160	84	2.7	84	78	10	253	53	4	20	21	1.62
65136--65331	36	5.5	35	84	7	220	57	1	22	18	1.49
65197--65251	22	2.5	22	88	5	76	56	0	23	20	1.42
65129--65331	72	2.8	71	84	10	263	57	1	22	18	1.51
65315--65374	12	4.8	12	75	18	59	60	1	23	15	1.44
65274--65365	46	2.0	46	89	4	139	56	2	25	16	1.51
65170--65451	7	40.9	7	66	18	85	56	2	23	17	1.54
65319--65393	19	3.9	19	77	10	80	58	5	21	14	1.56
65324--65519	34	5.6	34	79	13	211	57	4	21	16	1.56
65312--65504	72	2.8	72	79	12	188	59	3	22	15	1.52
65315--65417	19	5.3	19	74	9	73	57	4	24	13	1.56
65543--65609	21	3.1	21	73	25	68	53	7	13	25	1.65
68509--68605	52	1.9	50	82	4	122	39	26	9	24	1.86
71474--71570	52	1.9	51	87	4	142	39	26	9	24	1.86
71438--71568	52	2.8	43	75	14	118	36	25	10	26	1.89
80216--80317	2	51.0	2	98	0	195	49	0	50	0	1.00

Tables:   1

The End!