Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013778.1 Corchorus capsularis cultivar CVL-1 contig13799, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20700

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--48
18
2.1
17
95
5
65
32
0
10
56
1.34
2712--2761
26
1.9
26
91
0
82
10
22
8
60
1.55
3669--3701
17
1.9
17
93
0
57
36
15
3
45
1.61
4492--4537
8
5.9
8
82
12
60
76
0
21
2
0.90
4489--4537
12
4.3
11
82
10
55
77
0
20
2
0.87
4503--4537
4
8.8
4
93
0
61
74
0
22
2
0.95
4736--4794
31
1.9
31
92
0
100
44
1
18
35
1.60
6347--6419
32
2.2
32
79
9
85
54
16
10
17
1.70
8075--8114
19
2.1
19
100
0
80
22
5
20
52
1.65
8213--8250
20
1.9
20
94
0
67
42
15
5
36
1.70
8924--8961
2
19.0
2
100
0
76
50
0
0
50
1.00
17654--17690
18
2.1
18
90
5
58
43
18
13
24
1.86
20618--20657
20
2.0
20
95
0
71
47
5
20
27
1.70

Tables:   1

The End!