Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001378.1 Corchorus capsularis cultivar CVL-1 contig01378, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7354
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:1985 original size:9 final size:9

Alignment explanation


    Indices: 1971--2004  Score: 50
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       1961 GGAACGTAAC

                   * 
       1971 CATCTTCCT
          1 CATCTTCAT

                   * 
       1980 CATCTTCTT
          1 CATCTTCAT

                     
       1989 CATCTTCAT
          1 CATCTTCAT

                   
       1998 CATCTTC
          1 CATCTTC

       2005 GTCGTCGACT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   9   23  1.00

ACGTcount: A:0.15, C:0.38, G:0.00, T:0.47


Consensus pattern (9 bp):   
CATCTTCAT

Found at i:2089 original size:24 final size:24

Alignment explanation


    Indices: 2062--2109  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2052 GTTCCTTATG

                                    
       2062 CTGCTCCTCTTCTTGCTCCGGCTC
          1 CTGCTCCTCTTCTTGCTCCGGCTC

                  * *      *  *     
       2086 CTGCTCTTGTTCTTGTTCTGGCTC
          1 CTGCTCCTCTTCTTGCTCCGGCTC

       2110 TTGTTCATCT


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.00, C:0.38, G:0.19, T:0.44


Consensus pattern (24 bp):   
CTGCTCCTCTTCTTGCTCCGGCTC
Done.