Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013788.1 Corchorus capsularis cultivar CVL-1 contig13809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27868

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
919--943
12
2.1
12
100
0
50
52
8
0
40
1.31
1494--1546
16
3.4
16
70
15
56
35
33
18
11
1.87
1857--1891
12
3.0
11
91
8
52
28
0
0
71
0.86
7468--7541
33
2.3
33
92
2
123
12
28
37
21
1.89
8299--8513
57
3.8
57
91
1
351
55
17
10
16
1.67
8344--8429
26
3.1
26
67
20
75
54
18
8
18
1.67
8496--8529
11
3.0
11
86
4
50
55
17
11
14
1.68
12725--12855
33
4.0
33
89
0
181
22
33
34
9
1.87
12725--12855
66
2.0
66
89
3
201
22
33
34
9
1.87
19326--19372
24
2.0
24
100
0
94
59
2
4
34
1.29
20006--20041
6
6.3
6
93
6
58
0
16
0
83
0.65
20007--20037
16
1.9
16
100
0
62
0
16
0
83
0.64
24008--24078
37
1.9
38
91
5
119
32
9
25
32
1.89
26414--26477
30
2.1
30
82
5
76
25
29
14
31
1.94

Tables:   1

The End!