Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001379.1 Corchorus capsularis cultivar CVL-1 contig01379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7150
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35


Found at i:1288 original size:16 final size:16

Alignment explanation


    Indices: 1246--1287  Score: 59
    Period size: 16  Copynumber: 2.7  Consensus size: 16

       1236 TCTCTCTCAA

                *           
       1246 TTTGAGTTTTTGTTTG
          1 TTTGTGTTTTTGTTTG

               *            
       1262 TTTTTGTTTTTGTTTG
          1 TTTGTGTTTTTGTTTG

                       
       1278 TTTG-GTTTTT
          1 TTTGTGTTTTT

       1288 TTATTACCAT


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  15    6  0.26
  16   17  0.74

ACGTcount: A:0.02, C:0.00, G:0.21, T:0.76


Consensus pattern (16 bp):   
TTTGTGTTTTTGTTTG
Done.