Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013790.1 Corchorus capsularis cultivar CVL-1 contig13811, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40798

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3369--3420
26
2.0
27
85
11
72
19
7
9
63
1.48
4358--4403
10
4.7
10
82
10
51
23
26
10
39
1.88
4354--4395
21
2.0
20
90
4
66
23
21
11
42
1.86
6154--6197
22
2.0
22
86
8
63
40
11
4
43
1.61
6212--7408
22
54.5
22
65
17
247
35
14
9
39
1.80
6497--6581
23
3.7
23
87
1
109
37
15
9
37
1.80
6735--6833
20
4.7
20
67
22
67
37
12
10
40
1.76
7061--7676
22
28.1
22
67
14
138
35
17
9
37
1.82
7548--7678
44
3.1
43
83
7
160
38
14
10
35
1.81
7562--7673
41
2.6
42
83
6
129
38
16
9
35
1.81
9774--9798
3
8.3
3
100
0
50
68
0
32
0
0.90
12154--12178
11
2.3
11
100
0
50
24
28
16
32
1.96
19697--19722
4
6.5
4
100
0
52
26
0
73
0
0.84
19799--19824
7
3.7
7
100
0
52
0
11
0
88
0.52
24746--25225
67
7.9
56
85
10
291
26
16
23
33
1.96
24859--24946
45
2.0
45
90
2
142
29
13
19
37
1.90
24903--25265
67
5.4
67
95
0
638
25
17
22
34
1.95
25227--25312
41
2.1
41
95
0
154
22
16
16
45
1.85
32725--32763
2
19.5
2
100
0
78
48
0
0
51
1.00
33012--33170
60
2.6
58
80
8
176
36
16
16
30
1.91
33217--33382
31
5.5
28
67
18
86
28
19
16
34
1.94
33222--33378
60
2.6
60
87
2
235
28
18
16
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33244--33347
29
3.5
29
67
14
86
28
19
16
35
1.93
35349--35376
2
14.0
2
100
0
56
0
0
50
50
1.00
37816--37892
33
2.3
33
88
4
111
10
31
36
22
1.88
37996--38056
31
1.9
33
86
6
90
40
0
4
54
1.22
38901--38953
9
5.9
9
88
0
70
45
3
11
39
1.58
40649--40678
14
2.2
14
94
5
53
50
6
0
43
1.28

Tables:   1

The End!