Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013792.1 Corchorus capsularis cultivar CVL-1 contig13813, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21502

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--66
2
35.5
2
79
14
79
57
0
0
42
0.98
3119--3149
3
10.7
3
93
6
55
35
0
0
64
0.94
5542--5598
16
3.6
16
79
6
62
40
35
15
8
1.79
5585--5630
6
8.2
6
79
13
53
28
50
19
2
1.60
5799--5870
31
2.3
31
73
4
74
25
4
12
58
1.52
6372--6460
6
13.2
6
73
25
63
34
43
17
3
1.66
6374--6407
17
1.9
18
94
5
61
26
52
20
0
1.46
6397--6456
16
3.8
16
93
4
104
40
40
15
5
1.68
6380--6465
31
2.7
32
75
7
86
33
45
17
3
1.65
7872--7901
14
2.2
13
94
5
51
3
13
0
83
0.77
12462--12497
6
6.5
6
81
18
51
0
13
0
86
0.58
12455--12487
16
2.1
16
94
0
57
0
15
0
84
0.61
12444--12493
14
3.5
14
86
2
55
2
18
0
80
0.82
12455--12505
15
3.2
16
83
13
61
1
19
0
78
0.85
12455--12498
15
2.8
16
89
3
63
0
18
0
81
0.68
12455--12498
10
4.3
10
83
11
54
0
18
0
81
0.68
13218--13404
44
4.2
44
85
7
220
36
17
8
37
1.81
13213--13404
89
2.2
88
81
10
221
35
17
8
38
1.81
18915--18966
9
5.4
9
80
13
59
1
15
1
80
0.88
18907--18966
18
3.2
18
77
15
59
3
15
3
78
1.01
18914--18971
18
3.1
18
77
20
64
5
17
1
75
1.06

Tables:   1

The End!