genome.fa.s13793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013793.1 Corchorus capsularis cultivar CVL-1 contig13814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133846

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--88	2	44.0	2	97	0	167	0	51	0	48	1.00
370--497	64	2.0	64	98	0	247	28	11	9	50	1.69
6147--6184	15	2.5	15	87	8	51	21	7	5	65	1.38
15867--15922	25	2.1	29	83	12	75	48	12	17	21	1.80
15989--16057	28	2.5	28	100	0	138	27	28	28	14	1.95
19380--19446	28	2.4	28	97	2	127	13	19	28	38	1.89
20093--20126	11	3.2	11	91	4	52	76	2	0	20	0.92
20091--20129	15	2.7	15	88	11	55	74	2	0	23	0.94
23445--23520	38	2.0	38	94	0	134	46	6	21	26	1.75
23587--23780	43	4.7	43	90	5	278	36	8	19	36	1.81
23717--23792	35	2.1	35	92	2	125	40	7	15	35	1.77
23752--23878	57	2.4	51	89	7	182	38	8	14	37	1.78
23807--24036	76	2.9	76	92	3	370	37	9	17	35	1.82
23738--24186	133	3.4	129	76	15	399	38	7	17	36	1.78
23982--24021	21	1.9	21	90	10	64	45	0	17	37	1.49
23982--24029	21	2.3	21	85	7	62	45	4	14	35	1.64
23807--24211	76	5.5	73	80	11	318	38	8	17	36	1.80
23953--24106	57	2.7	56	89	2	227	37	6	20	36	1.78
24074--24246	35	4.9	35	89	0	256	38	8	15	37	1.78
26279--26327	21	2.3	21	86	6	64	28	38	20	12	1.89
38999--39044	20	2.3	21	85	7	60	23	30	4	41	1.74
46013--46089	35	2.2	34	90	4	118	32	10	7	49	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46056--46143	25	3.2	27	71	14	74	40	7	10	40	1.68
49398--49465	21	3.2	21	69	22	70	7	52	27	11	1.64
49368--49470	42	2.5	42	100	0	206	7	53	29	9	1.61
54876--54912	19	2.0	18	89	5	56	40	8	21	29	1.82
56870--56902	17	1.9	17	93	0	57	72	6	9	12	1.26
57406--57448	12	2.8	17	67	32	51	53	16	0	30	1.43
57414--57442	12	2.4	12	100	0	58	48	17	0	34	1.47
63850--63887	18	2.1	19	90	5	60	31	18	10	39	1.85
69393--69489	33	2.9	33	83	3	106	21	39	28	10	1.86
69446--69537	33	2.8	33	86	6	125	22	44	23	8	1.81
75684--75720	19	2.0	18	89	5	56	40	8	21	29	1.82
84106--84158	21	2.6	21	81	3	63	26	30	33	9	1.88
92697--93134	61	7.2	61	82	5	532	40	13	15	31	1.85
92700--93128	180	2.4	178	89	2	615	39	13	15	31	1.85
96829--96911	31	2.7	31	86	3	105	21	22	31	24	1.98
97074--97140	31	2.2	31	91	5	109	35	25	19	19	1.95
100744--100769	12	2.2	12	100	0	52	38	0	7	53	1.30
101129--101160	12	2.4	14	90	10	50	46	3	9	40	1.52
103173--103215	21	2.0	21	82	8	52	62	9	2	25	1.37
103996--104134	50	2.8	50	87	1	208	29	34	15	20	1.93
111956--112099	50	2.9	50	93	1	227	29	35	14	20	1.92
125980--126052	21	3.6	21	67	14	62	53	15	8	23	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129136--129217	26	3.1	27	76	13	80	43	10	9	35	1.73
129136--129187	25	2.0	27	85	7	72	44	13	9	32	1.76
129151--129215	28	2.3	27	80	12	69	53	9	9	27	1.63
133306--133446	35	4.0	35	82	8	180	19	21	2	56	1.55
133350--133482	7	19.1	7	66	18	55	19	23	3	54	1.58
133328--133481	69	2.2	71	77	10	165	19	22	2	55	1.56
133551--133773	26	8.4	26	74	13	188	17	19	8	55	1.66
133594--133651	16	3.9	15	76	21	59	17	20	6	55	1.65
133561--133770	53	3.9	53	91	3	341	16	19	8	56	1.65

Tables:   1

The End!