Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013799.1 Corchorus capsularis cultivar CVL-1 contig13820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48384
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:1154 original size:107 final size:103
Alignment explanation
Indices: 991--1252 Score: 373
Period size: 107 Copynumber: 2.5 Consensus size: 103
981 AGTTTAGCCT
* *
991 TAATTTCACTAAGTTTAGCCCCAAGTTAAAATTTTATTTTTATTTTAAGGGTAAATTTCAAAATT
1 TAATTTCACTAAGTTTAG-CCCAAATTAAAATTTTA-TTTTATTTTAAGGGTAAATTCCAAAATT
1056 AATAATTTATTGTTATAGGATTTTAGAAATAAAATACAAAAC
64 AATAA--TATTGTTATAGGATTTTAGAAATAAAATACAAAAC
*
1098 TAATTTCACTAAGTTTAGTCCCAAATTAAAATTTTATTTTCATTTTAAGGGTAAATTCCATAATT
1 TAATTTCACTAAGTTTAG-CCCAAATTAAAATTTTATTTT-ATTTTAAGGGTAAATTCCAAAATT
* * * *
1163 AATAATATTGTTATAGGGTTTTAGAAATAAAATATATAAT
64 AATAATATTGTTATAGGATTTTAGAAATAAAATACAAAAC
**
1203 TAA-TTCACTAAGTTTAGCCCAAATTAAAATTAAAATTTTATTTTAAGGGT
1 TAATTTCACTAAGTTTAGCCCAAATTAAAATT-TTATTTTATTTTAAGGGT
1253 TAGAAAAATT
Statistics
Matches: 143, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
103 25 0.17
104 19 0.13
105 34 0.24
106 4 0.03
107 61 0.43
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (103 bp):
TAATTTCACTAAGTTTAGCCCAAATTAAAATTTTATTTTATTTTAAGGGTAAATTCCAAAATTAA
TAATATTGTTATAGGATTTTAGAAATAAAATACAAAAC
Found at i:3194 original size:104 final size:104
Alignment explanation
Indices: 3014--3223 Score: 411
Period size: 104 Copynumber: 2.0 Consensus size: 104
3004 TATAATTAAT
*
3014 TAAAGGAAAATTTTAAAAATTAGATATTAGGGTAATACCTCTGCCAAATTATCTCAATTTAAGGG
1 TAAAGGAAAATTTTAAAAATTAGATATTAGGGTAATACCTCTACCAAATTATCTCAATTTAAGGG
3079 ATAATAACTACTCACCATTTTTCTCCCATTTACATGGCA
66 ATAATAACTACTCACCATTTTTCTCCCATTTACATGGCA
3118 TAAAGGAAAATTTTAAAAATTAGATATTAGGGTAATACCTCTACCAAATTATCTCAATTTAAGGG
1 TAAAGGAAAATTTTAAAAATTAGATATTAGGGTAATACCTCTACCAAATTATCTCAATTTAAGGG
3183 ATAATAACTACTCACCATTTTTCTCCCATTTACATGGCA
66 ATAATAACTACTCACCATTTTTCTCCCATTTACATGGCA
3222 TA
1 TA
3224 TTTCATTGAC
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 105 1.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (104 bp):
TAAAGGAAAATTTTAAAAATTAGATATTAGGGTAATACCTCTACCAAATTATCTCAATTTAAGGG
ATAATAACTACTCACCATTTTTCTCCCATTTACATGGCA
Found at i:5057 original size:15 final size:15
Alignment explanation
Indices: 5037--5079 Score: 56
Period size: 13 Copynumber: 3.1 Consensus size: 15
5027 CTGTAATAAG
5037 TAATAATCTTATTAC
1 TAATAATCTTATTAC
*
5052 TAATAA-GTT-TTAC
1 TAATAATCTTATTAC
5065 -AATAATCTTATTAC
1 TAATAATCTTATTAC
5079 T
1 T
5080 GTAAGTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
12 5 0.22
13 6 0.26
14 6 0.26
15 6 0.26
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.47
Consensus pattern (15 bp):
TAATAATCTTATTAC
Found at i:13682 original size:39 final size:38
Alignment explanation
Indices: 13623--13725 Score: 129
Period size: 39 Copynumber: 2.7 Consensus size: 38
13613 ATTGCCCTTA
* *
13623 TGTTATATGTGTTT-AGGGACTTTAGTATAGA-TGCCTCTG
1 TGTTATATGTGTTTGA-GGACTTT-G-AAAGAGTGCCCCTG
13662 TGTTATATGTGTTTGAGGACTTTGAAAGAGTTGCCCCTG
1 TGTTATATGTGTTTGAGGACTTTGAAAGAG-TGCCCCTG
*
13701 TGTTATATGTGTTTGGGGACTTTGA
1 TGTTATATGTGTTTGAGGACTTTGA
13726 TCATTGGAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
37 4 0.07
38 1 0.02
39 52 0.90
40 1 0.02
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (38 bp):
TGTTATATGTGTTTGAGGACTTTGAAAGAGTGCCCCTG
Found at i:13955 original size:37 final size:37
Alignment explanation
Indices: 13903--14078 Score: 157
Period size: 37 Copynumber: 4.8 Consensus size: 37
13893 AAGGTCCTTG
*
13903 TTAGGTGTCTCATCAAAATCTTGTTCAAGATCCCTGT
1 TTAGGTGTCTTATCAAAATCTTGTTCAAGATCCCTGT
* * * *
13940 TTAGGTGTCTTATC--AACCTTATTTAAGGTCCCTGT
1 TTAGGTGTCTTATCAAAATCTTGTTCAAGATCCCTGT
* *
13975 TT-GGTTGTCTCATCAAAATCTTGATCAAGATCCCTGT
1 TTAGG-TGTCTTATCAAAATCTTGTTCAAGATCCCTGT
* * * * *
14012 TTAGGTTTCTTTTC-AAATCCTTATAT-AAGGTCCCTAT
1 TTAGGTGTCTTATCAAAAT-CTTGT-TCAAGATCCCTGT
* *
14049 TTAGGTGTCTT-TCAAATTCTTGTTTAAGAT
1 TTAGGTGTCTTATCAAAATCTTGTTCAAGAT
14079 AGGTGTTCAA
Statistics
Matches: 109, Mismatches: 22, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
34 2 0.02
35 28 0.26
36 14 0.13
37 62 0.57
38 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.43
Consensus pattern (37 bp):
TTAGGTGTCTTATCAAAATCTTGTTCAAGATCCCTGT
Found at i:14649 original size:33 final size:35
Alignment explanation
Indices: 14612--14681 Score: 108
Period size: 37 Copynumber: 2.0 Consensus size: 35
14602 GTATAATTTG
14612 AAACTAA-TTCATTTATA-ATATATATATATATAT
1 AAACTAATTTCATTTATATATATATATATATATAT
14645 AAACTAATTCTTCATTTATATATATATATATATATAT
1 AAACTAA-T-TTCATTTATATATATATATATATATAT
14682 TATATTCAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 7 0.21
36 10 0.30
37 16 0.48
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (35 bp):
AAACTAATTTCATTTATATATATATATATATATAT
Found at i:15253 original size:166 final size:166
Alignment explanation
Indices: 14968--15279 Score: 434
Period size: 166 Copynumber: 1.9 Consensus size: 166
14958 TCATTTGTCA
* * *
14968 ATTGAGAAATGACCAAAAAGTTTAGATATTTAATCCCCTCAAGAATAAAAAGTTAGGACATTTAA
1 ATTGAGAAATGACCAAAAAGTCTAGATATTTAATCACCTCAAGAATAAAAAGTAAGGACATTTAA
* * * *
15033 GTAATCTGCCAAGTAGGTAAAGACGAAAAAGAATACTTCTCCAGCTCATCATTAATTCGGGGTAG
66 GTAATCGGCCAAGTAGGAAAAGACGAAAAAAAATACTTCTCCAGCTCATCATTAATCCGGGGTAG
15098 GGATCTTTTAGTAATTCCACTACTCTATTAAAGTCC
131 GGATCTTTTAGTAATTCCACTACTCTATTAAAGTCC
* * *
15134 ATTGAGAAATGACCAAAAAGTCTAGTTATTTAATCATCTCAAGAATCAAAAGCTAAGG-CATTTA
1 ATTGAGAAATGACCAAAAAGTCTAGATATTTAATCACCTCAAGAATAAAAAG-TAAGGACATTTA
* ** *
15198 AGTAATCGGTCAAGT-GTGAAAAGAC-AAAAAAAATTTGTTCTCTC-GCTCCTCATTAATCCGGG
65 AGTAATCGGCCAAGTAG-GAAAAGACGAAAAAAAA-TACTTCTC-CAGCTCATCATTAATCCGGG
15260 GTAGGGATCTTTTAGTAATT
127 GTAGGGATCTTTTAGTAATT
15280 TTCATATGTT
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
165 8 0.06
166 115 0.90
167 5 0.04
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (166 bp):
ATTGAGAAATGACCAAAAAGTCTAGATATTTAATCACCTCAAGAATAAAAAGTAAGGACATTTAA
GTAATCGGCCAAGTAGGAAAAGACGAAAAAAAATACTTCTCCAGCTCATCATTAATCCGGGGTAG
GGATCTTTTAGTAATTCCACTACTCTATTAAAGTCC
Found at i:18829 original size:21 final size:23
Alignment explanation
Indices: 18805--18851 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 23
18795 ATATTAAAAT
18805 AAATTAAA-AATAATA-ATAAAC
1 AAATTAAATAATAATAGATAAAC
* *
18826 AAA-TAAATGATAATAGATAAAT
1 AAATTAAATAATAATAGATAAAC
18848 AAAT
1 AAAT
18852 CCTAGATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
20 4 0.19
21 9 0.43
22 8 0.38
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (23 bp):
AAATTAAATAATAATAGATAAAC
Found at i:18838 original size:18 final size:18
Alignment explanation
Indices: 18812--18851 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
18802 AATAAATTAA
18812 AAATAATAATAAACAAAT
1 AAATAATAATAAACAAAT
* * *
18830 AAATGATAATAGATAAAT
1 AAATAATAATAAACAAAT
18848 AAAT
1 AAAT
18852 CCTAGATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.25
Consensus pattern (18 bp):
AAATAATAATAAACAAAT
Found at i:19458 original size:19 final size:19
Alignment explanation
Indices: 19421--19458 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
19411 AGACCAACAA
19421 TTAATCAAAATTAATGAAC
1 TTAATCAAAATTAATGAAC
*
19440 TTAATTCAACATTAA-GAAC
1 TTAA-TCAAAATTAATGAAC
19459 GAAAAATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.50, C:0.13, G:0.05, T:0.32
Consensus pattern (19 bp):
TTAATCAAAATTAATGAAC
Found at i:20153 original size:12 final size:12
Alignment explanation
Indices: 20136--20160 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20126 GAATATATTC
20136 TTAATATTCCAT
1 TTAATATTCCAT
20148 TTAATATTCCAT
1 TTAATATTCCAT
20160 T
1 T
20161 AATCTTTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (12 bp):
TTAATATTCCAT
Found at i:28367 original size:12 final size:12
Alignment explanation
Indices: 28350--28375 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
28340 TAAATAATTT
28350 AGATTTTATAGA
1 AGATTTTATAGA
28362 AGATTTTATAGA
1 AGATTTTATAGA
28374 AG
1 AG
28376 CTTTACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.38
Consensus pattern (12 bp):
AGATTTTATAGA
Found at i:28580 original size:21 final size:20
Alignment explanation
Indices: 28555--28815 Score: 244
Period size: 21 Copynumber: 12.8 Consensus size: 20
28545 ATTTTAAGGT
* *
28555 TTGACTTTCAAAATTTGGGAT
1 TTGACTATCAAAATTTGGG-G
* * *
28576 TTGACAATCAAACTTTGGAG
1 TTGACTATCAAAATTTGGGG
*
28596 TTGATTATCAAAATTTGGGGG
1 TTGACTATCAAAATTT-GGGG
*
28617 TTGAC-ATCAAACTTTGGGG
1 TTGACTATCAAAATTTGGGG
* *
28636 TTGACCATCAAACTTTGGGG
1 TTGACTATCAAAATTTGGGG
28656 TTTGACTATCAAAATTTGGGGG
1 -TTGACTATCAAAATTT-GGGG
*
28678 TTGACAATCAAAATTTAGGGG
1 TTGACTATCAAAATTT-GGGG
* * *
28699 TTGACAATTAAACTTTGGGAG
1 TTGACTATCAAAATTTGGG-G
28720 TTGACTATCAAAATTTAGGGG
1 TTGACTATCAAAATTT-GGGG
* *
28741 TTAACTATCAAACTTTGGGG
1 TTGACTATCAAAATTTGGGG
*
28761 TTTGACTATCAAAATTTGAGGT
1 -TTGACTATCAAAATTTG-GGG
*
28783 TTGACCATC--AA--TGGGG
1 TTGACTATCAAAATTTGGGG
28799 TTTGACTATCAAAATTT
1 -TTGACTATCAAAATTT
28816 TGGTGATTGA
Statistics
Matches: 199, Mismatches: 28, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
16 2 0.01
17 10 0.05
19 13 0.07
20 43 0.22
21 122 0.61
22 9 0.05
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.35
Consensus pattern (20 bp):
TTGACTATCAAAATTTGGGG
Found at i:28688 original size:42 final size:42
Alignment explanation
Indices: 28555--28815 Score: 279
Period size: 42 Copynumber: 6.4 Consensus size: 42
28545 ATTTTAAGGT
* * *
28555 TTGACTTTCAAAATTTGGGATTTGACAATCAAACTTT-GGAG
1 TTGACTATCAAAATTTGGGGTTTGACAATCAAACTTTGGGGG
* *
28596 TTGATTATCAAAATTTGGGGGTTGAC-ATCAAACTTT-GGGG
1 TTGACTATCAAAATTTGGGGTTTGACAATCAAACTTTGGGGG
* * * *
28636 TTGACCATCAAACTTTGGGGTTTGACTATCAAAATTTGGGGG
1 TTGACTATCAAAATTTGGGGTTTGACAATCAAACTTTGGGGG
* * *
28678 TTGACAATCAAAATTTAGGGG-TTGACAATTAAACTTTGGGAG
1 TTGACTATCAAAATTT-GGGGTTTGACAATCAAACTTTGGGGG
* * *
28720 TTGACTATCAAAATTTAGGGG-TTAACTATCAAACTTTGGGGT
1 TTGACTATCAAAATTT-GGGGTTTGACAATCAAACTTTGGGGG
* * *
28762 TTGACTATCAAAATTTGAGGTTTGACCATC-AA---TGGGGT
1 TTGACTATCAAAATTTGGGGTTTGACAATCAAACTTTGGGGG
28800 TTGACTATCAAAATTT
1 TTGACTATCAAAATTT
28816 TGGTGATTGA
Statistics
Matches: 191, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
38 22 0.12
40 35 0.18
41 36 0.19
42 94 0.49
43 4 0.02
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.35
Consensus pattern (42 bp):
TTGACTATCAAAATTTGGGGTTTGACAATCAAACTTTGGGGG
Found at i:28872 original size:20 final size:21
Alignment explanation
Indices: 28849--28893 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
28839 CCATTGATGA
*
28849 TCAAACCCC-AATTTTGATAG
1 TCAAACCCCAAAGTTTGATAG
28869 TCAAACCCCAAAGTTTGATAG
1 TCAAACCCCAAAGTTTGATAG
28890 TCAA
1 TCAA
28894 CACGTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (21 bp):
TCAAACCCCAAAGTTTGATAG
Found at i:29120 original size:17 final size:16
Alignment explanation
Indices: 29085--29123 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
29075 AAATTAAAAG
*
29085 AAAA-AACACATATAT
1 AAAATAACACATAAAT
29100 AAAATAACACTATAAAT
1 AAAATAACAC-ATAAAT
29117 AAAATAA
1 AAAATAA
29124 TGGTCAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.19
16 5 0.24
17 12 0.57
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATAACACATAAAT
Found at i:32099 original size:23 final size:23
Alignment explanation
Indices: 32073--32116 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
32063 ACAAGAAACT
32073 TACATTAAAATTGAAAGATACAA
1 TACATTAAAATTGAAAGATACAA
32096 TACATTAAAATTGAAAGATAC
1 TACATTAAAATTGAAAGATAC
32117 CTTGTATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.27
Consensus pattern (23 bp):
TACATTAAAATTGAAAGATACAA
Found at i:46650 original size:45 final size:45
Alignment explanation
Indices: 46599--46684 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
46589 TAATAGAGTA
46599 GTGGAATTAATAAAAGATCCCTACCCCGAATTAATGATGAGATTG
1 GTGGAATTAATAAAAGATCCCTACCCCGAATTAATGATGAGATTG
* *
46644 GTGGAATTACTAAAAGATCCCTACCCCGGATTAATGATGAG
1 GTGGAATTAATAAAAGATCCCTACCCCGAATTAATGATGAG
46685 CTGGAGAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (45 bp):
GTGGAATTAATAAAAGATCCCTACCCCGAATTAATGATGAGATTG
Found at i:47083 original size:2 final size:2
Alignment explanation
Indices: 47076--47113 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
47066 TTTTAATTGA
*
47076 AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
47114 AATGAAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:47191 original size:3 final size:3
Alignment explanation
Indices: 47130--47176 Score: 85
Period size: 3 Copynumber: 15.3 Consensus size: 3
47120 GAATTAGTTT
47130 TTA TATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
47176 T
1 T
47177 ATACTACATA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:47651 original size:165 final size:165
Alignment explanation
Indices: 47207--47686 Score: 624
Period size: 168 Copynumber: 2.9 Consensus size: 165
47197 AAACATATGA
** * * * *
47207 AATTACTAAAATATCCCCATCCCGAATTAATGAGGAGCAAGAGAACTAATTTTTTTTCGTCTTTT
1 AATTACTAAAATATCCCCATCAAGGATTGATGATGAGCTAGAGAACTAA--TTTTTTCGTCTTTT
* * *
47272 CCCACTTGGCA-AGTTACTTAAATGTCCCAACTTTTGATTCTTGAGGGAATTAAATAACTAGACT
64 CCTACTTGGCAGA-TTACTTAAATGTCCTAACTTTTGATTCTTGAGGGGATTAAATAACTAGACT
* *
47336 TTTTGGTCATTTCTCAATTGACTTTAATAGAGTAGTGG
128 TTTTGGTCATTTCTCAATGGACTTGAATAGAGTAGTGG
* * * * * ** * *
47374 AGTTACTAAAAGATCCCTACCAA-GACTTGCTTTTAGAGTTAGAGAACTTATTTTTTTCCGTCTT
1 AATTACTAAAATATCCCCATCAAGGA-TTGATGAT-GAGCTAGAGAAC-TAATTTTTT-CGTCTT
* * *
47438 TTCCTACTTGGCAGATTACTTAAATGTCCTAATTTTTTATTCTTGAGGGGATTAAATAAGTA-AT
62 TTCCTACTTGGCAGATTACTTAAATGTCCTAACTTTTGATTCTTGAGGGGATTAAATAACTAGA-
*
47502 CTTTTTGGTCATTTCTCAATGGACTTGAATAGAGTGGTGG
126 CTTTTTGGTCATTTCTCAATGGACTTGAATAGAGTAGTGG
* * *
47542 AATTAATAAAATATCCCCATCAAGGATTGATGATGAGCTAGAGAACTAATCTTTTCGTCTTTACC
1 AATTACTAAAATATCCCCATCAAGGATTGATGATGAGCTAGAGAACTAATTTTTTCGTCTTTTCC
47607 TACTTGGCAGATTACTTAAATGTCCTAACTTTTGATTCTTGAGGGGATTAAATAACTAGACTTTT
66 TACTTGGCAGATTACTTAAATGTCCTAACTTTTGATTCTTGAGGGGATTAAATAACTAGACTTTT
47672 TGGTCATTTCTCAAT
131 TGGTCATTTCTCAAT
47687 TGACAAATAA
Statistics
Matches: 266, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
165 84 0.32
166 9 0.03
167 38 0.14
168 130 0.49
169 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (165 bp):
AATTACTAAAATATCCCCATCAAGGATTGATGATGAGCTAGAGAACTAATTTTTTCGTCTTTTCC
TACTTGGCAGATTACTTAAATGTCCTAACTTTTGATTCTTGAGGGGATTAAATAACTAGACTTTT
TGGTCATTTCTCAATGGACTTGAATAGAGTAGTGG
Done.