Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013802.1 Corchorus capsularis cultivar CVL-1 contig13823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50647

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9998--10028
15
2.1
15
100
0
62
32
25
0
41
1.56
10066--10134
31
2.2
32
87
7
97
28
14
5
50
1.66
11507--11544
19
2.0
20
85
15
53
28
5
2
63
1.30
11710--11812
22
4.6
22
77
7
82
34
9
16
38
1.82
11905--12248
22
15.5
21
68
18
121
40
10
15
33
1.82
12086--12279
88
2.2
88
80
8
209
43
9
12
34
1.75
12379--12860
22
22.1
22
68
14
151
37
10
16
35
1.82
12569--12631
23
2.7
23
87
4
92
38
6
15
39
1.73
12722--12807
45
1.9
45
83
4
111
33
11
16
38
1.85
16647--16683
19
2.0
19
89
5
58
35
0
0
64
0.94
19780--19813
2
17.0
2
100
0
68
0
50
0
50
1.00
26412--26499
28
3.1
28
100
0
176
25
13
25
36
1.92
37461--37485
13
1.9
13
100
0
50
0
96
4
0
0.24
45854--46333
241
2.0
236
91
2
773
28
18
9
43
1.81
46233--46586
105
3.4
105
92
1
550
41
8
8
41
1.66
46851--47220
107
3.5
107
94
2
631
41
9
8
40
1.69
49010--49064
19
2.8
19
76
10
58
49
1
1
47
1.23
50449--50561
60
1.9
60
81
7
140
31
17
8
41
1.80
50586--50645
20
3.0
20
85
2
66
23
21
11
43
1.85

Tables:   1

The End!