Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013803.1 Corchorus capsularis cultivar CVL-1 contig13824, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50626

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6960--7011
19
2.8
19
73
23
56
61
7
28
1
1.34
7661--8007
190
1.8
190
96
1
642
42
15
14
27
1.86
11494--11532
2
19.5
2
94
0
69
48
0
2
48
1.15
13297--13325
2
14.5
2
100
0
58
51
0
0
48
1.00
17936--18044
39
2.8
39
82
1
137
42
26
12
18
1.86
22000--22054
16
3.6
16
69
14
53
34
27
21
16
1.95
22532--22571
20
2.0
20
90
0
62
35
20
30
15
1.93
24685--24788
39
2.7
40
86
3
140
44
28
9
17
1.80
29015--29104
44
2.0
44
100
0
180
28
4
15
51
1.63
31421--31467
17
2.9
16
87
6
69
55
2
36
6
1.37
32562--32599
11
3.5
11
89
10
51
39
0
2
57
1.12
35796--35822
2
13.5
2
100
0
54
0
0
48
51
1.00
47391--47534
60
2.4
60
91
0
225
34
20
18
27
1.95
47390--47532
29
4.7
31
69
17
104
33
19
18
28
1.95
47533--47679
58
2.5
58
88
4
206
29
19
15
35
1.93
47531--47622
31
3.0
31
69
10
91
27
20
16
35
1.94

Tables:   1

The End!