Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013804.1 Corchorus capsularis cultivar CVL-1 contig13825, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94981

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52--80
15
2.0
15
93
6
51
44
0
6
48
1.29
2165--2233
29
2.4
28
83
9
84
36
15
2
44
1.62
2178--2235
29
2.0
29
89
0
89
34
17
1
46
1.58
6996--7046
24
2.1
24
85
3
66
3
31
9
54
1.51
10140--10170
2
15.5
2
93
0
53
54
0
45
0
0.99
11094--11119
12
2.2
12
100
0
52
34
26
15
23
1.94
16536--16615
16
5.0
16
77
6
72
51
21
11
16
1.75
19542--19612
37
1.9
37
91
0
115
38
16
7
38
1.76
28736--29122
200
1.9
200
90
1
614
31
15
17
35
1.91
33719--33743
5
5.0
5
100
0
50
40
0
0
60
0.97
33713--33755
15
2.9
15
77
16
54
39
0
4
55
1.20
34255--34305
25
2.0
25
88
7
77
41
7
13
37
1.74
46533--46583
26
1.9
26
84
11
68
25
47
15
11
1.80
46621--46712
16
5.8
15
72
10
51
35
38
16
9
1.82
46883--46919
14
2.7
14
87
4
58
67
0
13
18
1.23
47481--47623
16
9.2
16
75
9
109
34
35
18
10
1.86
47512--47618
32
3.4
32
81
7
130
35
37
17
9
1.82
50036--50064
2
14.5
2
100
0
58
51
0
0
48
1.00
57322--57352
6
5.2
6
100
0
62
32
0
0
67
0.91
57713--57749
2
18.5
2
100
0
74
51
0
0
48
1.00
58853--58896
21
2.1
21
91
0
70
25
31
9
34
1.87
59069--59204
34
4.2
33
83
3
159
11
33
38
15
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61197--61243
23
2.0
23
100
0
94
21
17
19
42
1.89
67344--67412
34
2.0
34
97
0
129
42
24
4
28
1.74
78002--78036
18
1.9
18
94
0
61
51
8
0
40
1.33
80107--80283
93
1.9
93
89
0
273
33
12
1
51
1.50
86701--86739
20
2.0
20
84
0
51
38
7
0
53
1.30
89703--89735
2
17.0
2
87
6
50
51
3
0
45
1.16
91820--91896
30
2.5
30
91
2
118
27
10
28
33
1.90
94828--94873
23
2.0
23
100
0
92
47
26
8
17
1.76
94937--94981
2
23.0
2
95
4
83
51
0
0
48
1.00

Tables:   1

The End!