Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013814.1 Corchorus capsularis cultivar CVL-1 contig13835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60124

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12412--12437
2
13.0
2
100
0
52
0
50
0
50
1.00
15185--15251
22
3.1
22
74
6
66
38
0
4
56
1.19
15585--15628
21
2.1
20
91
0
61
31
31
27
9
1.88
16126--16160
2
17.5
2
100
0
70
51
0
0
48
1.00
16228--16259
15
2.1
15
100
0
64
46
6
0
46
1.27
16351--16383
2
16.5
2
100
0
66
51
0
0
48
1.00
19293--19362
32
2.2
32
94
0
122
45
10
10
34
1.71
21351--21381
1
31.0
1
100
0
62
0
0
0
100
0.00
26468--26610
71
2.0
71
98
0
277
25
16
12
46
1.82
31736--31769
2
17.0
2
100
0
68
0
50
0
50
1.00
36545--36574
14
2.1
15
93
6
53
83
0
16
0
0.65
38018--38131
61
1.9
60
85
5
158
29
21
20
28
1.98
38275--38341
27
2.4
27
85
5
80
23
17
23
34
1.96
38356--38441
35
2.5
35
92
0
145
31
16
29
23
1.96
43305--43468
48
3.8
41
77
15
161
41
9
9
39
1.70
43322--43477
48
3.3
48
80
17
193
41
7
10
40
1.69
43371--43468
42
2.4
41
83
10
119
41
9
9
39
1.69
43949--44029
39
2.1
39
95
0
144
40
13
13
32
1.84
53722--53751
6
5.0
6
100
0
60
50
0
33
16
1.46

Tables:   1

The End!