genome.fa.s13818.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013818.1 Corchorus capsularis cultivar CVL-1 contig13839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58318

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--911	457	2.0	457	98	0	1752	31	22	18	26	1.97
2217--2271	25	2.2	25	75	9	60	45	12	5	36	1.66
2651--2714	29	2.2	29	86	2	85	29	15	14	40	1.86
2659--2716	29	2.0	28	90	3	89	31	13	15	39	1.86
2892--3015	49	2.5	49	85	2	151	26	15	21	36	1.93
4908--4971	25	2.6	25	76	11	69	34	12	21	31	1.91
8708--8739	16	2.0	16	100	0	64	43	12	12	31	1.80
9105--9280	41	4.3	39	76	13	147	36	11	9	42	1.74
9015--9317	22	14.2	21	69	18	141	36	12	10	40	1.77
9157--9305	64	2.3	64	80	12	162	37	12	8	42	1.72
9475--9579	22	4.7	22	79	9	106	36	12	9	41	1.75
9475--9579	46	2.3	44	84	9	124	36	12	9	41	1.75
14145--14177	13	2.5	13	95	0	57	21	12	9	57	1.62
14174--14200	6	4.5	6	100	0	54	29	0	14	55	1.40
18613--18652	17	2.3	17	86	4	53	50	5	2	42	1.37
18936--18999	25	2.4	25	82	12	67	46	3	6	43	1.44
19023--19161	30	4.7	31	70	12	114	49	2	6	41	1.40
19811--19843	17	1.9	17	88	11	50	39	0	0	60	0.97
20461--20519	31	1.9	31	92	0	100	35	6	8	49	1.60
22430--22702	78	3.6	78	90	6	429	49	0	14	35	1.46
22477--22702	70	3.1	70	86	10	328	50	0	14	34	1.47
25092--25145	27	2.0	27	92	0	90	38	27	16	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25095--25161	27	2.5	27	85	4	82	38	26	16	17	1.91
25525--25975	64	7.1	64	88	2	604	43	15	18	21	1.88
25525--26028	128	4.0	125	85	3	562	42	15	19	22	1.88
35772--36089	49	6.5	48	83	5	345	21	31	17	29	1.96
35757--36092	97	3.5	96	83	4	388	20	31	17	30	1.96
38116--38208	33	2.8	33	81	3	98	21	38	27	11	1.89
44658--44798	33	4.3	33	78	7	117	20	41	26	11	1.86
50685--50757	32	2.3	32	100	0	146	50	16	9	23	1.74
53274--53343	27	2.6	27	86	0	86	38	28	15	17	1.90
56408--56443	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!