genome.fa.s13832.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013832.1 Corchorus capsularis cultivar CVL-1 contig13853, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124349

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8239--8292	22	2.5	22	90	6	83	42	9	7	40	1.65
8238--8343	22	4.9	22	73	9	74	35	12	7	44	1.70
8528--8630	46	2.3	43	80	11	116	37	13	8	39	1.76
8550--8629	23	3.5	23	82	1	99	38	12	6	42	1.68
8506--8754	22	11.5	22	72	15	146	36	13	8	41	1.76
8506--8754	44	5.8	44	74	11	174	36	13	8	41	1.76
8873--9002	22	5.9	22	73	12	106	33	15	10	40	1.80
8853--9086	44	5.4	44	73	11	162	34	13	10	42	1.78
9196--9254	22	2.7	22	79	10	66	35	16	10	37	1.83
9569--9606	19	2.0	20	85	15	53	63	2	5	28	1.30
9742--9818	38	2.1	36	85	7	102	59	11	14	14	1.61
9895--9938	21	2.1	21	91	0	70	18	36	9	36	1.82
11090--11163	38	2.0	37	89	2	112	29	0	29	40	1.57
14215--14253	20	1.9	20	89	5	60	46	25	2	25	1.66
15163--15572	156	2.6	156	85	2	538	31	16	20	31	1.94
16013--16048	19	1.9	20	88	11	58	69	0	0	30	0.89
17800--17863	22	2.9	22	71	0	65	35	14	10	39	1.81
17857--17906	22	2.3	22	86	6	66	28	14	4	54	1.58
18058--18149	22	4.1	22	79	10	80	35	15	10	38	1.82
18069--18194	23	5.6	23	78	14	104	36	14	9	39	1.78
18093--18194	46	2.2	46	84	8	129	36	14	8	40	1.77
18199--18359	22	7.5	22	73	8	109	32	16	8	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18310--18359	20	2.5	20	93	0	82	30	18	10	42	1.82
19574--19639	31	2.1	31	86	5	89	50	4	18	27	1.66
19798--20400	22	27.9	22	67	11	194	35	14	9	40	1.79
20413--20807	22	17.7	22	69	14	127	34	15	9	40	1.81
20853--20963	46	2.5	44	81	10	118	38	16	10	34	1.83
20848--21031	22	8.3	22	71	14	110	38	17	10	33	1.84
20853--21026	44	3.9	42	80	7	150	37	16	10	35	1.83
21195--21232	19	2.0	20	85	15	53	63	2	5	28	1.30
21359--21407	15	3.5	15	68	21	52	57	0	8	34	1.29
21577--21614	19	2.0	20	85	15	53	63	2	5	28	1.30
21740--21786	25	2.0	23	88	12	69	53	0	8	38	1.32
21813--21878	31	2.1	32	83	5	82	45	4	21	28	1.71
21149--21914	382	2.0	383	98	0	1475	43	6	10	38	1.66
26668--26895	75	3.0	75	79	2	226	30	14	16	38	1.88
26713--26924	75	2.8	75	77	4	187	30	15	16	37	1.89
30698--30733	2	18.0	2	100	0	72	50	0	0	50	1.00
33291--33399	54	2.0	54	100	0	218	22	23	27	25	2.00
43478--43536	26	2.2	28	81	6	68	49	1	1	47	1.21
45497--45529	17	1.9	17	88	11	50	60	0	0	39	0.97
47968--48016	25	2.0	25	95	0	89	14	32	18	34	1.91
48013--48052	21	2.0	20	85	9	55	47	32	2	17	1.61
51501--51574	37	2.0	37	100	0	148	48	24	5	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51633--51688	27	2.1	27	100	0	112	32	14	17	35	1.90
58306--58347	14	3.0	14	100	0	84	14	14	42	28	1.84
58449--58485	19	1.9	19	88	0	56	37	16	29	16	1.90
63265--63308	2	22.0	2	100	0	88	0	50	0	50	1.00
69610--69634	1	25.0	1	100	0	50	100	0	0	0	0.00
71389--71413	11	2.3	11	100	0	50	64	0	8	28	1.22
71463--71542	41	2.0	41	97	0	151	56	5	8	30	1.51
71738--71763	6	4.3	6	100	0	52	0	34	15	50	1.45
75112--75151	16	2.5	16	87	0	53	30	0	2	67	1.04
76279--76642	187	1.9	187	100	0	728	32	13	15	38	1.86
76759--76821	32	2.1	30	88	11	94	39	12	12	34	1.82
76967--77204	126	1.9	124	85	3	325	51	1	11	35	1.49
78083--78136	22	2.5	22	80	16	60	40	5	14	38	1.70
78424--78491	32	2.2	31	84	7	84	27	10	10	51	1.68
81749--81811	25	2.5	25	85	10	92	28	19	26	25	1.98
87040--87069	8	3.8	8	90	0	51	40	0	23	36	1.55
92855--92955	43	2.2	48	72	22	115	38	15	12	32	1.86
92877--92961	43	2.0	43	92	0	143	34	15	11	38	1.84
93278--93330	21	2.5	21	72	22	56	45	11	11	32	1.76
93810--94108	151	2.0	151	90	0	472	48	19	12	19	1.81
94247--94281	11	3.1	11	87	4	52	68	28	2	0	1.04
96328--96542	108	2.0	108	94	1	378	43	16	6	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100796--100841	20	2.2	21	88	3	67	26	8	4	60	1.44
109896--109925	5	6.0	5	100	0	60	0	20	0	80	0.72
114451--114482	6	5.7	6	85	14	50	18	81	0	0	0.70
114453--114482	11	2.7	11	100	0	60	16	83	0	0	0.65
115490--115564	39	1.9	39	97	0	141	26	20	26	26	1.99

Tables:   1

The End!