Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013836.1 Corchorus capsularis cultivar CVL-1 contig13857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71704

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111--154
21
2.1
21
91
0
70
36
11
29
22
1.89
5327--5372
22
2.1
22
83
0
56
26
30
23
19
1.98
5637--5723
42
2.0
43
89
6
133
51
6
4
36
1.49
6536--6606
36
2.0
36
94
5
126
61
5
8
23
1.46
7060--7410
186
1.9
181
88
2
522
41
6
12
39
1.69
7773--7885
57
2.0
57
92
0
190
35
21
10
32
1.88
9359--9393
2
17.5
2
93
0
61
45
0
2
51
1.16
13988--14030
3
14.3
3
85
0
59
58
0
41
0
0.98
13991--14030
15
2.7
15
96
0
71
57
0
42
0
0.98
19586--19861
138
2.0
138
98
0
534
33
15
22
28
1.95
22312--22348
14
2.7
15
88
12
53
54
0
0
45
1.00
22312--22368
19
3.1
19
85
7
64
54
0
0
45
0.99
22310--22368
18
3.1
18
78
11
64
52
0
0
47
1.00
23006--23056
18
2.7
21
85
14
67
31
1
0
66
1.03
23015--23056
6
6.5
6
84
15
57
30
2
0
66
1.04
33433--33477
12
3.5
13
81
9
56
57
11
0
31
1.33
34733--34757
2
12.5
2
100
0
50
48
0
0
52
1.00
39571--39625
17
3.3
17
75
12
60
5
21
0
72
1.04
40728--40772
21
2.1
21
95
0
81
28
11
17
42
1.84
40748--40878
55
2.3
55
81
7
138
30
12
14
42
1.82
40941--41039
49
2.0
50
94
3
175
23
13
22
41
1.88
41018--41168
76
2.0
76
84
3
196
27
11
19
41
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41338--41412
33
2.2
35
88
7
109
25
12
20
42
1.86
41254--41488
111
2.1
111
84
6
298
22
13
22
42
1.88
41369--41512
76
1.9
77
85
2
200
24
15
21
38
1.92
46265--46360
50
1.9
49
85
2
129
19
6
18
55
1.64
47372--47414
21
2.0
21
95
0
77
41
9
11
37
1.74
47527--47557
16
2.0
15
93
6
53
38
6
12
41
1.69
49868--49914
22
2.1
22
88
0
67
10
25
4
59
1.49
50485--50531
22
2.1
22
92
0
76
10
27
4
57
1.51
53860--53907
22
2.2
21
78
10
53
8
6
37
47
1.59
59792--60194
36
11.1
35
85
5
414
48
11
14
25
1.77
63146--63190
21
2.1
22
84
12
58
17
35
8
37
1.81
64114--64250
27
5.1
27
76
7
134
19
16
36
27
1.93
66646--66727
39
2.1
39
84
2
103
32
9
4
52
1.56

Tables:   1

The End!