Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013838.1 Corchorus capsularis cultivar CVL-1 contig13859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36484

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7800--7923
62
2.0
62
90
3
196
25
26
12
35
1.92
9701--9731
12
2.6
12
89
0
53
22
41
0
35
1.54
11460--11735
124
2.3
122
84
6
355
51
3
8
36
1.51
14163--14207
21
2.1
22
87
4
65
15
40
8
35
1.79
14387--14459
32
2.2
32
87
4
101
17
35
36
9
1.83
20035--20067
2
16.5
2
100
0
66
51
0
0
48
1.00
23299--23352
21
2.5
21
96
3
99
16
48
20
14
1.81
24372--24436
20
3.2
20
70
23
64
36
4
12
46
1.62
24358--24437
40
2.0
40
97
0
151
36
5
12
46
1.64
24490--24750
130
2.0
131
95
2
472
27
11
13
46
1.79
27713--27769
27
2.1
27
93
6
98
29
22
28
19
1.98
29341--29453
39
3.1
39
60
29
95
46
14
0
38
1.50
29320--29458
69
2.0
69
100
0
278
44
14
1
39
1.54
29495--29525
2
15.5
2
100
0
62
51
0
0
48
1.00
34490--34603
55
2.1
56
84
1
149
29
13
18
38
1.89
35712--35741
15
1.9
16
93
6
53
3
13
6
76
1.11

Tables:   1

The End!