Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013840.1 Corchorus capsularis cultivar CVL-1 contig13861, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49460

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13466--13532
31
2.2
31
86
0
89
37
13
13
35
1.84
14328--14404
31
2.5
31
80
0
82
37
16
12
32
1.87
15497--15533
17
2.2
17
100
0
74
37
10
5
45
1.62
18411--18443
17
1.9
17
93
0
57
27
9
36
27
1.87
19992--20156
31
5.5
31
69
16
139
33
19
20
27
1.96
19996--20156
60
2.7
60
95
0
277
34
19
19
26
1.96
20027--20125
29
3.3
29
71
15
85
32
18
21
28
1.96
20193--20385
31
6.4
30
72
13
155
26
18
19
35
1.95
20255--20350
29
3.2
29
69
16
97
29
18
17
34
1.94
20221--20381
60
2.7
60
95
1
279
26
19
18
35
1.95
23420--23461
21
1.9
22
90
9
68
33
30
7
28
1.84
25418--25455
19
2.0
19
85
10
51
13
15
44
26
1.83
25239--25736
119
4.2
119
87
0
690
17
25
25
31
1.97
25181--25736
238
2.4
236
85
4
705
17
25
26
31
1.97
26358--26403
24
1.9
24
95
0
83
6
28
23
41
1.79
35190--35244
2
27.5
2
100
0
110
0
0
49
50
1.00
35358--35393
16
2.2
16
95
5
63
27
5
11
55
1.57
41810--41853
21
2.1
21
83
8
54
29
2
2
65
1.16
42520--42560
21
2.0
21
90
0
64
19
46
9
24
1.80
42725--42787
33
1.9
33
83
0
81
19
28
31
20
1.97
42818--42856
15
2.6
15
79
0
51
38
2
2
56
1.27
42827--42880
22
2.4
23
90
3
83
35
1
5
57
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47850--47967
16
7.4
16
81
10
134
31
39
22
6
1.80
47850--47967
32
3.7
32
85
6
150
31
39
22
6
1.80
48077--48123
21
2.2
21
92
0
76
29
8
6
55
1.55
48570--48718
16
9.4
16
88
6
207
31
38
22
7
1.82

Tables:   1

The End!