Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013842.1 Corchorus capsularis cultivar CVL-1 contig13863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114327
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:303 original size:15 final size:16
Alignment explanation
Indices: 270--301 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
260 AGATTGATTT
270 ACCCAAACAACAAAAA
1 ACCCAAACAACAAAAA
*
286 ACCCAACCAACAAAAA
1 ACCCAAACAACAAAAA
302 CCAGTTAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.34, G:0.00, T:0.00
Consensus pattern (16 bp):
ACCCAAACAACAAAAA
Found at i:3687 original size:1 final size:1
Alignment explanation
Indices: 3681--3723 Score: 86
Period size: 1 Copynumber: 43.0 Consensus size: 1
3671 CTAAAGTTTT
3681 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3724 CAAATTGTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:19306 original size:84 final size:84
Alignment explanation
Indices: 19201--19370 Score: 340
Period size: 84 Copynumber: 2.0 Consensus size: 84
19191 AATATGTAGT
19201 GTGTGTGTGTGTGTGTGTGTGGCTTGAAAATTTGAGATTTTTAGTTTGAAGGTTTTAGAGGAAAA
1 GTGTGTGTGTGTGTGTGTGTGGCTTGAAAATTTGAGATTTTTAGTTTGAAGGTTTTAGAGGAAAA
19266 TGAAGCAAATGGCAAAAGA
66 TGAAGCAAATGGCAAAAGA
19285 GTGTGTGTGTGTGTGTGTGTGGCTTGAAAATTTGAGATTTTTAGTTTGAAGGTTTTAGAGGAAAA
1 GTGTGTGTGTGTGTGTGTGTGGCTTGAAAATTTGAGATTTTTAGTTTGAAGGTTTTAGAGGAAAA
19350 TGAAGCAAATGGCAAAAGA
66 TGAAGCAAATGGCAAAAGA
19369 GT
1 GT
19371 CAAAAGGGGA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.29, C:0.04, G:0.32, T:0.35
Consensus pattern (84 bp):
GTGTGTGTGTGTGTGTGTGTGGCTTGAAAATTTGAGATTTTTAGTTTGAAGGTTTTAGAGGAAAA
TGAAGCAAATGGCAAAAGA
Found at i:20563 original size:12 final size:12
Alignment explanation
Indices: 20540--20570 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
20530 TTTTGTTATT
20540 ATATTGTATGAAA
1 ATATT-TATGAAA
20553 ATATTTATGAAA
1 ATATTTATGAAA
20565 ATATTT
1 ATATTT
20571 TGATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (12 bp):
ATATTTATGAAA
Found at i:22467 original size:21 final size:21
Alignment explanation
Indices: 22441--22491 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
22431 GAATCAATAT
*
22441 ACATGATTTGCGGACACGGT-A
1 ACATGATTTGCGGAAAC-GTCA
22462 ACATGATTTGCGGAAACGTCA
1 ACATGATTTGCGGAAACGTCA
22483 ACATGATTT
1 ACATGATTT
22492 TCGGCTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (21 bp):
ACATGATTTGCGGAAACGTCA
Found at i:22544 original size:30 final size:30
Alignment explanation
Indices: 22508--22564 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
22498 TCAATCTTGG
* *
22508 ATCCTGCTGTAAACAAACTGTTGACTTTGA
1 ATCCTGCAGTAAACAAACAGTTGACTTTGA
* *
22538 ATCCTGCAGTAAATACACAGTTGACTT
1 ATCCTGCAGTAAACAAACAGTTGACTT
22565 ATTTCATCAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (30 bp):
ATCCTGCAGTAAACAAACAGTTGACTTTGA
Found at i:23942 original size:79 final size:79
Alignment explanation
Indices: 23798--23947 Score: 203
Period size: 79 Copynumber: 1.9 Consensus size: 79
23788 ACGCCACCCC
* * * *
23798 GCAGGATATCCAATGATCTCATAACATTGATCTTTTGTATGTCCCGACTTCTGACAGTGTCCACA
1 GCAGGATATCCAATGATCTCATAACATTGATCTTTCGCATGTCCCCACTTCTGACAATGTCCACA
23863 TCTTGGACCTTGGA
66 TCTTGGACCTTGGA
* * * * *
23877 GCAGGATATCCAATGATCTCATAGCATTGGTCTTTCGCATG-CCCCACCTTTTGGCAATGTTCAC
1 GCAGGATATCCAATGATCTCATAACATTGATCTTTCGCATGTCCCCA-CTTCTGACAATGTCCAC
23941 ATCTTGG
65 ATCTTGG
23948 CTTGTCTTTC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
78 4 0.07
79 57 0.93
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (79 bp):
GCAGGATATCCAATGATCTCATAACATTGATCTTTCGCATGTCCCCACTTCTGACAATGTCCACA
TCTTGGACCTTGGA
Found at i:24990 original size:21 final size:21
Alignment explanation
Indices: 24964--25014 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
24954 GAATCAATCT
24964 ACATGATTTGCGGACACGGT-A
1 ACATGATTTGCGGACAC-GTCA
24985 ACATGATTTGCGGACACGTCA
1 ACATGATTTGCGGACACGTCA
25006 ACATGATTT
1 ACATGATTT
25015 TCGGCTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (21 bp):
ACATGATTTGCGGACACGTCA
Found at i:29741 original size:24 final size:24
Alignment explanation
Indices: 29714--29763 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
29704 AAATTAATCC
* * *
29714 TTTTTAAATTAGAAATGTTAGAAA
1 TTTTTAAATTAAAAATATTAAAAA
*
29738 TTTTTGAATTAAAAATATTAAAAA
1 TTTTTAAATTAAAAATATTAAAAA
29762 TT
1 TT
29764 ACAATCCTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (24 bp):
TTTTTAAATTAAAAATATTAAAAA
Found at i:35517 original size:58 final size:58
Alignment explanation
Indices: 35442--35603 Score: 324
Period size: 58 Copynumber: 2.8 Consensus size: 58
35432 TTCTACTCCC
35442 CTAATAGAAGTGGACAGATAATATGGGATGGAGGAAGTACTTCTTATCCACTTTTCCT
1 CTAATAGAAGTGGACAGATAATATGGGATGGAGGAAGTACTTCTTATCCACTTTTCCT
35500 CTAATAGAAGTGGACAGATAATATGGGATGGAGGAAGTACTTCTTATCCACTTTTCCT
1 CTAATAGAAGTGGACAGATAATATGGGATGGAGGAAGTACTTCTTATCCACTTTTCCT
35558 CTAATAGAAGTGGACAGATAATATGGGATGGAGGAAGTACTTCTTA
1 CTAATAGAAGTGGACAGATAATATGGGATGGAGGAAGTACTTCTTA
35604 AGATGCTTTA
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 104 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.30
Consensus pattern (58 bp):
CTAATAGAAGTGGACAGATAATATGGGATGGAGGAAGTACTTCTTATCCACTTTTCCT
Found at i:38652 original size:26 final size:26
Alignment explanation
Indices: 38616--38670 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
38606 CTTTCCACCA
38616 GGAGATTTGACGACGCGGCGCTGGTT
1 GGAGATTTGACGACGCGGCGCTGGTT
*
38642 GGAGATTTGACGATGCGGCGCTGGTT
1 GGAGATTTGACGACGCGGCGCTGGTT
38668 GGA
1 GGA
38671 CTTGGTGGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.16, C:0.16, G:0.44, T:0.24
Consensus pattern (26 bp):
GGAGATTTGACGACGCGGCGCTGGTT
Found at i:39487 original size:21 final size:21
Alignment explanation
Indices: 39461--39505 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
39451 AAAAGCATTA
39461 ATTAATTTGTTTAAAAAAGGC
1 ATTAATTTGTTTAAAAAAGGC
*
39482 ATTAATTTGTTTAAAAGAGGC
1 ATTAATTTGTTTAAAAAAGGC
39503 ATT
1 ATT
39506 GTACTACGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (21 bp):
ATTAATTTGTTTAAAAAAGGC
Found at i:58509 original size:18 final size:18
Alignment explanation
Indices: 58477--58515 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
58467 CAAACCCTTC
*
58477 ATTCAAATCAACATTTCT
1 ATTCAAATCAACATTCCT
**
58495 ATTCAAATCCCCATTCCT
1 ATTCAAATCAACATTCCT
58513 ATT
1 ATT
58516 ACTCTCTAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTCAAATCAACATTCCT
Found at i:61425 original size:31 final size:31
Alignment explanation
Indices: 61364--61425 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
61354 TCTTTTTTTG
* * *
61364 GTGTATCAAAGAGTGACACATGTCACGTCAC
1 GTGTACCAAAAAGTGACACATGGCACGTCAC
* *
61395 GTGTACCAAAAAGTGACACGTGGCATGTCAC
1 GTGTACCAAAAAGTGACACATGGCACGTCAC
61426 ATGTTTTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (31 bp):
GTGTACCAAAAAGTGACACATGGCACGTCAC
Found at i:66447 original size:2 final size:2
Alignment explanation
Indices: 66440--66464 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
66430 AACAAAAGAT
66440 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
66465 TAGTTTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:70358 original size:120 final size:120
Alignment explanation
Indices: 70145--70389 Score: 445
Period size: 120 Copynumber: 2.0 Consensus size: 120
70135 TAAGATTGCT
*
70145 AAATTTAGGCAAACACACACAGAAGTTACTATTTCTACAATTGGATTACACTGATCTCAGTAAAA
1 AAATTAAGGCAAACACACACAGAAGTTACTATTTCTACAATTGGATTACACTGATCTCAGTAAAA
* *
70210 GCTTAAGACTTCACGTCCACGCCTATCCAGGGAAAATGCCCGCAATGCATAGTCC
66 GCTTAAGACTTCACGTCCACACCTATCCAGGGAAAATGCCCACAATGCATAGTCC
70265 AAATTAAGGCAAACACACACAGAAGTTACTATTTCTACAATTGGATTACACTGATCTCAGTAAAA
1 AAATTAAGGCAAACACACACAGAAGTTACTATTTCTACAATTGGATTACACTGATCTCAGTAAAA
* *
70330 GCTTAAGACTTCACGTCCACATCTATCCAGGGAAAATGCCCACAATGCGTAGTCC
66 GCTTAAGACTTCACGTCCACACCTATCCAGGGAAAATGCCCACAATGCATAGTCC
70385 AAATT
1 AAATT
70390 TGTCAAAACT
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (120 bp):
AAATTAAGGCAAACACACACAGAAGTTACTATTTCTACAATTGGATTACACTGATCTCAGTAAAA
GCTTAAGACTTCACGTCCACACCTATCCAGGGAAAATGCCCACAATGCATAGTCC
Found at i:73210 original size:16 final size:16
Alignment explanation
Indices: 73189--73223 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
73179 ACAATTCAGA
73189 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCTCTG
73205 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCTCTG
73221 AAG
1 AAG
73224 TATTTCAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (16 bp):
AAGCAGAAAAGCTCTG
Found at i:76364 original size:16 final size:16
Alignment explanation
Indices: 76343--76377 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76333 ATCTGAAATA
* *
76343 CTTCAGAGTTTTTCTG
1 CTTCAGAGCTCTTCTG
76359 CTTCAGAGCTCTTCTG
1 CTTCAGAGCTCTTCTG
76375 CTT
1 CTT
76378 TCTGAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (16 bp):
CTTCAGAGCTCTTCTG
Found at i:77209 original size:68 final size:68
Alignment explanation
Indices: 77118--77260 Score: 225
Period size: 68 Copynumber: 2.1 Consensus size: 68
77108 ACGTAGTTCA
* *
77118 TTTTTTTTTGTGCTCTAAGTTTTGCCTAAGCTGTCCTTTGCAGGATTTTCAACTTAGCGTAG-TC
1 TTTTTTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCG-AGCTC
77182 CTTT
65 CTTT
* * *
77186 TTTTTTTTTTTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAATTTAGCGAGCTTC
1 TTTTTTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTCC
77251 TTT
66 TTT
77254 TTTTTTT
1 TTTTTTT
77261 GTTGGTTTGA
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
67 2 0.03
68 67 0.97
ACGTcount: A:0.14, C:0.19, G:0.15, T:0.52
Consensus pattern (68 bp):
TTTTTTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGCTCC
TTT
Found at i:79508 original size:16 final size:16
Alignment explanation
Indices: 79487--79521 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
79477 ATCTGAAATA
79487 CTTCAGAGCTTTTCTG
1 CTTCAGAGCTTTTCTG
79503 CTTCAGAGCTTTTCTG
1 CTTCAGAGCTTTTCTG
79519 CTT
1 CTT
79522 TCTGAATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (16 bp):
CTTCAGAGCTTTTCTG
Found at i:94433 original size:66 final size:66
Alignment explanation
Indices: 94291--94673 Score: 405
Period size: 66 Copynumber: 5.8 Consensus size: 66
94281 TTTTTTACCG
* * * * * * * * * **
94291 GAGTTTGCATTGTCGTATATTATGAATGGACTGATTGGAGAATTCACACTTTTAGATT-TCTTGC
1 GAGTTTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTTGGATTCT-TTTT
*
94355 TC
65 TT
* * * * * * *
94357 GAGCTTGGATTCTCATAAATGATAAATGGGCTAATCGGAGAGTTCAAACCTTTGGATTCTTTTTT
1 GAGTTTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTTGGATTCTTTTTT
94422 T
66 T
94423 GAGTTTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTTGGATTCTTTTTT
1 GAGTTTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTTGGATTCTTTTTT
94488 T
66 T
** * *
94489 GAGTTTGCTTTCTCATAAATTATGAATGGACTGATCGGAGAATTCACACCTTT-GAGTTCTTTTT
1 GAGTTTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTTGGA-TTCTTTTT
94553 TT
65 TT
* * *
94555 GAGTTTGTAGTCTCATAAATTATGAACGGACTAATTGGAGAATTCACACCTTTGGATT-TCTTTT
1 GAGTTTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTTGGATTCT-TTTT
94619 TT
65 TT
* * * * * * *
94621 GAGTCAT-CATTTTCATAAATTATGAATGGATTGATCGGAGAATTAACACCTTT
1 GAGT-TTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTT
94674 CTTGTGTAAG
Statistics
Matches: 269, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
65 3 0.01
66 262 0.97
67 4 0.01
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (66 bp):
GAGTTTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTTGGATTCTTTTTT
T
Found at i:94639 original size:198 final size:198
Alignment explanation
Indices: 94291--94673 Score: 475
Period size: 198 Copynumber: 1.9 Consensus size: 198
94281 TTTTTTACCG
* * * * * *
94291 GAGTTTGCATTGTCGTATATTATGAATGGACTGATTGGAGAATTCACACTTTTAGATTTCTTGCT
1 GAGTTTGCATTCTCATAAATTATGAATGGACTGATCGGAGAATTCACACCTTTAGAGTTCTTGCT
* * * *
94356 CGAGCTTGGATTCTCATAAATGATAAATGGGCTAATCGGAGAGTTCAAACCTTTGGATTCTTTTT
66 CGAGCTTGGAGTCTCATAAATGATAAACGGACTAATCGGAGAATTCAAACCTTTGGATTCTTTTT
* * *
94421 TTGAGTTTGGATTCTCATAAATTATGAACGGACTAATCGGAGAATTCACACCTTTGGATTCTTTT
131 TTGAGTATGCATTCTCATAAATTATGAACGGACTAATCGGAGAATTAACACCTTTGGATTCTTTT
94486 TTT
196 TTT
* **
94489 GAGTTTGCTTTCTCATAAATTATGAATGGACTGATCGGAGAATTCACACCTTT-GAGTTCTTTTT
1 GAGTTTGCATTCTCATAAATTATGAATGGACTGATCGGAGAATTCACACCTTTAGAGTTC-TTGC
* * * * * * *
94553 TTGAGTTTGTAGTCTCATAAATTATGAACGGACTAATTGGAGAATTCACACCTTTGGATT-TCTT
65 TCGAGCTTGGAGTCTCATAAATGATAAACGGACTAATCGGAGAATTCAAACCTTTGGATTCT-TT
* * * *
94617 TTTTGAGTCAT-CATTTTCATAAATTATGAATGGATTGATCGGAGAATTAACACCTTT
129 TTTTGAGT-ATGCATTCTCATAAATTATGAACGGACTAATCGGAGAATTAACACCTTT
94674 CTTGTGTAAG
Statistics
Matches: 155, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
197 6 0.04
198 148 0.95
199 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (198 bp):
GAGTTTGCATTCTCATAAATTATGAATGGACTGATCGGAGAATTCACACCTTTAGAGTTCTTGCT
CGAGCTTGGAGTCTCATAAATGATAAACGGACTAATCGGAGAATTCAAACCTTTGGATTCTTTTT
TTGAGTATGCATTCTCATAAATTATGAACGGACTAATCGGAGAATTAACACCTTTGGATTCTTTT
TTT
Found at i:107964 original size:1 final size:1
Alignment explanation
Indices: 107958--107987 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
107948 TCCTGTTTAG
107958 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
107988 GTGTGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Done.