Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013848.1 Corchorus capsularis cultivar CVL-1 contig13869, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39980

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1014--1051
18
2.1
19
90
5
60
23
10
18
47
1.79
2252--2284
4
8.2
4
87
12
50
48
0
0
51
1.00
5713--6000
142
2.0
142
90
1
452
38
22
14
24
1.91
15046--15072
13
2.1
13
100
0
54
40
29
14
14
1.86
17903--17990
16
5.6
16
75
14
78
6
20
35
37
1.79
17904--18005
32
3.2
32
78
12
113
6
21
36
35
1.80
18953--19005
2
25.0
2
82
17
63
45
0
7
47
1.31
19287--19376
45
2.0
45
93
4
155
34
20
21
24
1.96
20630--20766
32
4.3
32
78
5
109
8
18
35
36
1.82
20659--20766
48
2.2
48
82
6
121
8
19
37
34
1.82
20630--20766
16
8.6
16
69
15
86
8
18
35
36
1.82
22711--22880
85
2.0
85
91
2
279
38
10
16
34
1.83
23704--23842
32
4.4
33
84
8
148
16
13
33
36
1.88
23779--23830
16
3.2
16
68
10
52
21
11
30
36
1.89
24824--24969
74
2.0
75
93
1
249
39
15
21
23
1.92
26324--26468
50
2.9
50
91
6
240
29
33
13
23
1.93
27602--27737
16
8.5
16
85
1
148
6
11
30
51
1.63
27806--27836
15
2.0
16
93
6
55
0
12
38
48
1.42
29915--30015
53
1.9
53
93
0
175
30
10
19
38
1.86
31715--32116
196
2.0
200
90
7
647
28
22
14
34
1.93
36565--36601
19
1.9
19
94
0
65
18
10
21
48
1.78
38265--38349
33
2.6
33
78
0
107
34
20
21
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38741--38801
27
2.2
28
82
8
72
14
11
11
62
1.55

Tables:   1

The End!