Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013849.1 Corchorus capsularis cultivar CVL-1 contig13870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6659
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:6646 original size:34 final size:33

Alignment explanation


    Indices: 6595--6659  Score: 96
    Period size: 34  Copynumber: 1.9  Consensus size: 33

       6585 CAAGAATTAG

                        *                    
       6595 TTTTTTTTTTCGTTTTTTCTA-AAAAAAAAAGT
          1 TTTTTTTTTTCGATTTTTCTATAAAAAAAAAGT

                                             
       6627 TTTTTCTTTTTCCGATTTTTCTATAAAAAAAAA
          1 TTTTT-TTTTT-CGATTTTTCTATAAAAAAAAA


Statistics
Matches: 29,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  32    5  0.17
  33    5  0.17
  34   10  0.34
  35    9  0.31

ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54


Consensus pattern (33 bp):   
TTTTTTTTTTCGATTTTTCTATAAAAAAAAAGT
Done.