Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013858.1 Corchorus capsularis cultivar CVL-1 contig13879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31818

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
801--989
46
4.1
46
88
2
236
32
14
23
30
1.94
1151--1271
36
3.4
36
85
6
165
27
21
24
26
1.99
1685--1718
17
2.0
17
94
0
59
41
17
20
20
1.91
1705--1793
37
2.4
37
92
0
142
34
17
28
19
1.95
1794--1986
45
4.2
44
79
6
181
27
16
24
31
1.96
2495--2646
65
2.3
65
86
1
196
26
15
25
32
1.95
2671--2872
104
1.9
108
84
9
272
32
22
21
23
1.98
2858--2990
68
2.0
68
86
3
187
35
20
19
24
1.96
3843--3934
46
2.0
46
97
0
175
35
8
26
29
1.86
4971--5007
19
1.9
19
88
0
56
70
0
5
24
1.08
8528--8598
26
2.7
27
84
2
90
18
14
23
43
1.86
24129--24192
33
1.9
34
87
6
96
35
20
9
34
1.85
24172--24276
33
3.2
33
81
5
104
43
20
9
25
1.82
25776--25801
10
2.6
10
100
0
52
23
26
0
50
1.50
31018--31048
15
2.1
15
93
0
53
19
16
0
64
1.29
31005--31075
24
2.8
25
82
6
72
19
18
0
61
1.34
31056--31159
16
6.2
16
65
20
61
25
21
2
50
1.63
31226--31274
14
3.5
14
83
10
64
22
20
4
53
1.63
31289--31326
14
2.8
13
88
11
58
21
18
5
55
1.62
31572--31658
32
2.7
32
89
3
120
20
17
4
57
1.57
31669--31818
38
4.0
37
76
11
119
28
18
7
46
1.75

Tables:   1

The End!