Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013861.1 Corchorus capsularis cultivar CVL-1 contig13882, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33705

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1024--1116
30
3.1
30
90
4
118
35
18
3
43
1.66
3451--4070
156
4.0
157
89
2
910
32
19
16
30
1.94
3451--4067
313
2.0
312
89
1
950
32
19
16
31
1.94
14252--14304
16
3.4
16
89
5
81
7
11
37
43
1.69
15875--15914
21
1.9
22
85
10
57
27
2
5
65
1.27
16537--16630
22
4.3
22
65
15
59
34
14
7
43
1.74
16637--17316
22
31.5
22
68
16
291
36
15
10
37
1.81
17415--17581
88
1.9
88
80
4
194
32
14
10
41
1.80
17415--17686
22
12.5
22
71
10
139
33
15
9
41
1.79
17716--17753
20
1.9
20
100
0
76
65
2
5
26
1.27
18134--18185
27
2.0
27
85
11
72
44
1
11
42
1.51
18171--18232
31
2.0
31
90
9
101
51
3
12
32
1.56
19790--19818
2
15.0
2
92
7
51
48
0
0
51
1.00
20597--20636
15
2.7
15
100
0
80
0
40
27
32
1.57
21537--21570
2
17.0
2
100
0
68
50
0
0
50
1.00
27046--27102
27
2.1
27
90
6
89
35
15
22
26
1.94
32893--32927
3
11.7
3
100
0
70
34
0
0
65
0.93
33486--33529
23
1.9
23
95
0
79
50
0
0
50
1.00

Tables:   1

The End!