Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013862.1 Corchorus capsularis cultivar CVL-1 contig13883, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48303

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2268--2373
31
3.5
31
90
3
162
27
14
28
30
1.95
9311--9401
25
3.6
25
88
2
121
21
23
28
26
1.99
10185--10228
21
2.1
21
86
0
61
38
34
6
20
1.79
15586--16636
434
2.4
433
83
5
1263
26
12
17
42
1.85
17374--17438
30
2.1
31
88
2
96
27
16
4
50
1.65
17380--17446
30
2.2
31
86
5
91
31
13
4
50
1.61
17575--17649
38
2.0
38
84
5
98
14
17
13
54
1.71
17738--17833
22
4.4
22
77
0
84
41
9
15
33
1.79
17934--18075
44
3.2
44
83
4
171
41
9
14
35
1.77
17934--18075
66
2.2
66
79
7
146
41
9
14
35
1.77
17934--18466
22
24.8
22
65
14
132
37
9
16
35
1.82
18086--18155
37
1.9
35
83
11
88
38
4
20
37
1.72
18246--18334
45
2.0
45
82
4
108
33
10
15
40
1.81
18432--18583
62
2.5
62
91
0
241
42
8
13
35
1.74
19837--19871
2
17.5
2
100
0
70
0
48
0
51
1.00
30779--30808
2
15.0
2
100
0
60
50
0
0
50
1.00
31741--31901
79
2.0
79
95
0
286
31
23
14
30
1.95
35505--35545
12
3.3
12
90
6
64
26
19
17
36
1.94
37212--37246
2
17.5
2
100
0
70
48
0
0
51
1.00
39612--39805
104
1.9
104
92
1
325
27
20
19
32
1.96
45463--45698
105
2.3
104
88
0
355
30
18
18
33
1.95
46542--46614
22
3.1
22
71
17
65
41
27
9
21
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48270--48303
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!