Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013865.1 Corchorus capsularis cultivar CVL-1 contig13886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25859

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2006--2479
22
21.7
22
69
10
154
36
14
9
39
1.78
2275--2354
23
3.5
22
85
10
92
41
13
7
37
1.73
2603--2656
22
2.5
22
93
0
90
35
11
9
44
1.72
2601--2711
56
2.0
56
100
0
222
34
10
8
46
1.68
2625--2690
34
1.9
34
93
0
114
33
9
10
46
1.70
2659--2940
22
12.6
22
71
17
140
34
14
9
41
1.77
3109--3175
30
2.2
32
81
8
84
46
4
16
32
1.67
3117--3181
31
2.1
31
85
2
87
46
4
20
29
1.70
3826--3877
23
2.2
24
80
10
63
44
1
1
51
1.23
4758--4820
30
2.1
31
84
3
83
36
15
3
44
1.63
4758--4817
29
2.0
30
87
3
86
36
16
3
43
1.65
7473--7512
2
20.0
2
89
0
62
45
2
0
52
1.14
7704--7751
16
3.0
16
73
11
53
37
22
16
22
1.94
8430--8485
27
2.1
26
83
3
67
62
0
8
28
1.25
8288--8587
153
1.9
157
89
3
473
50
2
9
38
1.47
8763--8805
14
2.8
16
79
13
54
37
0
0
62
0.95
8851--8976
59
2.2
57
85
4
164
34
4
7
53
1.51
9949--9975
11
2.5
11
100
0
54
48
7
7
37
1.59
11007--11038
12
2.7
12
100
0
64
43
9
21
25
1.82
10917--11108
105
1.8
105
100
0
384
39
16
21
22
1.92
11727--12134
206
2.0
206
96
0
744
31
22
13
32
1.92
12903--13194
75
3.9
74
82
8
353
22
23
19
34
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12916--13199
143
2.0
146
87
2
412
21
23
19
34
1.96
13157--13519
109
3.3
109
93
0
582
22
22
22
33
1.97
14728--14921
45
4.4
45
86
6
254
27
23
19
29
1.98
14759--14921
85
1.9
85
91
2
265
29
23
18
28
1.98
14882--15032
56
2.7
56
87
0
203
31
25
15
28
1.95
14882--15063
56
3.3
53
78
10
168
31
26
14
27
1.95
15092--15186
44
2.2
44
92
3
156
33
27
12
26
1.92
22266--22290
12
2.1
12
100
0
50
24
16
44
16
1.86
22399--22464
30
2.2
30
86
5
89
22
37
30
9
1.85
23323--23406
36
2.3
36
87
0
123
25
19
21
34
1.96
23563--23653
46
2.0
46
89
4
139
29
23
16
30
1.96
23803--23834
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!