Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013866.1 Corchorus capsularis cultivar CVL-1 contig13887, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172337

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
135932--135971
20
2.0
20
100
0
80
25
0
35
40
1.56
145475--145520
16
2.9
16
75
12
51
58
0
0
41
0.98
145481--145518
14
2.5
15
87
8
51
60
0
0
39
0.97
145615--145774
84
1.9
83
91
3
259
51
2
10
35
1.49
145894--145957
22
3.0
22
88
2
85
37
0
15
46
1.46
145905--145967
22
2.9
22
92
0
99
38
0
17
44
1.49
145905--145962
18
3.0
18
75
18
53
37
0
17
44
1.49
146262--146323
31
2.0
31
84
6
81
46
8
16
29
1.75
147625--147689
31
2.1
31
85
5
87
29
13
4
52
1.61
148805--148915
22
5.0
21
76
7
78
34
9
18
36
1.85
148850--148937
22
3.9
23
79
5
81
32
7
19
39
1.81
148849--148937
46
1.9
46
81
4
108
33
7
19
39
1.80
148980--149372
22
17.6
22
67
18
106
39
9
15
35
1.79
149134--149243
21
5.0
21
70
23
66
40
9
16
33
1.80
149204--149394
44
4.4
43
73
7
136
42
9
12
35
1.75
150697--150925
22
10.6
22
74
11
127
42
9
13
34
1.76
150697--151125
44
9.8
44
68
10
193
39
9
14
36
1.79
150820--150899
23
3.5
23
89
1
108
42
6
12
38
1.68
150910--150969
22
2.7
22
73
14
61
35
11
11
41
1.78
150987--151049
22
2.8
22
78
2
54
31
14
17
36
1.90
150994--151049
22
2.5
22
82
2
67
30
12
19
37
1.89
161453--161477
6
4.2
6
100
0
50
48
0
36
16
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170831--170975
74
2.0
74
95
2
265
39
29
11
19
1.87
172300--172337
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1   2

The End!