Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013868.1 Corchorus capsularis cultivar CVL-1 contig13889, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31932

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109--160
2
26.0
2
92
0
86
48
1
0
50
1.12
2360--2399
21
2.0
21
85
5
55
22
17
17
42
1.89
5367--5661
134
2.2
134
85
2
394
19
27
26
27
1.99
5923--5952
15
2.0
15
93
0
51
33
16
26
23
1.96
6908--6945
17
2.2
17
90
0
58
28
2
39
28
1.70
7291--7654
156
2.3
154
78
7
369
34
19
14
31
1.92
9244--9303
31
1.9
32
96
3
113
30
1
18
50
1.57
9263--9331
35
1.9
36
88
2
104
24
5
17
52
1.66
9408--9445
18
2.0
20
90
10
62
68
18
2
10
1.30
9588--9629
2
21.0
2
100
0
84
0
50
0
50
1.00
9883--9913
2
15.0
2
93
6
53
48
3
0
48
1.17
9948--10006
31
1.9
31
96
0
109
30
15
3
50
1.60
10116--10222
22
4.9
22
91
0
169
34
13
16
35
1.88
10093--10276
22
8.3
22
82
3
118
32
10
19
38
1.86
10315--10436
22
5.5
22
69
10
70
34
11
18
35
1.87
10473--10727
22
11.6
22
70
15
129
43
9
12
34
1.76
10530--10568
21
2.0
19
85
14
53
46
5
7
41
1.55
10561--10727
88
1.9
87
81
7
203
41
10
13
34
1.78
10517--10702
66
2.8
65
74
12
162
42
8
12
36
1.74
10810--10874
19
3.4
19
89
2
85
43
13
20
23
1.87
10865--11134
22
12.5
22
68
12
98
40
8
14
37
1.76
10912--11007
44
2.2
44
84
3
122
42
9
16
31
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11017--11115
45
2.2
45
82
7
121
41
8
14
36
1.75
11326--11378
21
2.5
21
87
3
70
39
15
11
33
1.83
11499--11547
2
24.0
2
91
4
80
46
4
0
48
1.20
11570--11628
31
1.9
31
86
6
84
28
20
3
47
1.66
12336--12381
23
2.0
24
83
12
60
28
4
6
60
1.40
13166--13409
123
2.0
123
98
0
470
43
29
13
13
1.82
23980--24020
11
3.9
10
87
6
55
0
17
0
82
0.66
27890--27950
3
19.0
3
86
9
77
60
4
0
34
1.18
29722--29882
83
1.9
84
88
6
247
34
22
3
39
1.72

Tables:   1

The End!