Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013871.1 Corchorus capsularis cultivar CVL-1 contig13892, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2176
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36


Found at i:1822 original size:27 final size:27

Alignment explanation


    Indices: 1792--1855  Score: 76
    Period size: 27  Copynumber: 2.4  Consensus size: 27

       1782 TTATTTCTTA

                        *               
       1792 TTTGG-CATTAGGGTCATCCAGGGGCAT
          1 TTTGGTCATTAGCG-CATCCAGGGGCAT

                      **     *         
       1819 TTTGGTCATTTTCGCATTCAGGGGCAT
          1 TTTGGTCATTAGCGCATCCAGGGGCAT

                      
       1846 TTTGGTCATT
          1 TTTGGTCATT

       1856 TTGAGTCCAC


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  27   27  0.84
  28    5  0.16

ACGTcount: A:0.16, C:0.17, G:0.28, T:0.39


Consensus pattern (27 bp):   
TTTGGTCATTAGCGCATCCAGGGGCAT
Done.