Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013874.1 Corchorus capsularis cultivar CVL-1 contig13895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4011

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--84
18
2.7
18
83
6
62
75
0
20
4
0.97
93--241
45
3.3
44
84
3
190
34
8
20
36
1.82
582--611
14
2.1
15
93
6
53
83
0
16
0
0.65
979--1015
16
2.3
17
81
13
51
78
8
13
0
0.96
1001--1077
24
3.2
24
70
17
61
70
0
22
7
1.13
1018--1078
22
2.8
23
83
11
76
68
0
22
8
1.15
2212--2307
49
2.0
49
87
4
140
20
17
23
37
1.94
2364--2471
36
3.0
36
70
8
103
16
12
27
42
1.85
2356--2459
36
2.9
35
73
7
111
13
14
27
44
1.83
2451--2871
70
6.0
70
87
2
603
21
19
22
37
1.95
2921--2996
40
1.9
40
84
10
102
28
15
13
42
1.85
3085--3305
58
3.7
57
81
5
253
23
20
16
39
1.91

Tables:   1

The End!