Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013880.1 Corchorus capsularis cultivar CVL-1 contig13901, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6232
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:2723 original size:25 final size:26

Alignment explanation


    Indices: 2678--2738  Score: 88
    Period size: 25  Copynumber: 2.4  Consensus size: 26

       2668 TCTTCTTCTT

                                      
       2678 CTTCGATTCGAAAATTTCCCTGACTC
          1 CTTCGATTCGAAAATTTCCCTGACTC

                                  *  *
       2704 CTTCGATTCG-AAATTTCCCTGGCTT
          1 CTTCGATTCGAAAATTTCCCTGACTC

               *      
       2729 CTTGGATTCG
          1 CTTCGATTCG

       2739 GTTCTTCAAA


Statistics
Matches: 32,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  25   22  0.69
  26   10  0.31

ACGTcount: A:0.18, C:0.28, G:0.16, T:0.38


Consensus pattern (26 bp):   
CTTCGATTCGAAAATTTCCCTGACTC
Done.