Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013883.1 Corchorus capsularis cultivar CVL-1 contig13904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71619

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5300--5339
21
2.0
20
85
5
53
47
7
17
27
1.74
5450--5498
20
2.4
20
86
10
64
53
0
2
44
1.12
5669--5775
42
2.5
42
100
0
214
17
5
16
59
1.55
6540--6578
6
6.8
6
91
2
55
56
0
7
35
1.28
11537--11569
11
3.0
11
95
0
57
42
27
27
3
1.70
13477--13543
21
3.2
21
68
16
57
35
26
10
26
1.89
18617--18741
16
7.9
16
78
7
121
9
16
36
37
1.81
18617--18775
48
3.4
47
83
9
193
10
16
35
36
1.84
19132--19168
13
2.8
13
87
4
56
18
13
0
67
1.23
19313--19447
16
8.4
16
76
8
78
10
20
37
31
1.86
19311--19398
32
2.7
31
75
16
90
9
20
36
34
1.84
19371--19447
32
2.4
33
76
4
86
10
18
40
31
1.84
27894--27942
24
2.0
24
92
0
80
34
34
12
18
1.88
28763--28814
15
3.5
15
84
5
61
17
11
42
28
1.84
31452--31500
24
2.0
24
96
0
89
34
36
10
18
1.85
32371--32425
17
3.2
17
82
10
67
38
20
20
21
1.94
36402--36481
33
2.3
35
85
10
103
36
0
7
56
1.28
36399--36449
3
17.0
3
78
8
50
33
0
5
60
1.21
36502--36550
20
2.3
22
89
6
75
38
0
4
57
1.18
40583--40717
33
4.1
32
82
7
119
10
25
42
21
1.85
41401--41448
21
2.3
22
89
10
75
54
18
16
10
1.70
44576--44615
18
2.2
18
86
4
53
45
5
20
30
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48145--48253
33
3.3
33
97
0
209
44
18
11
25
1.84
48243--48330
33
2.7
32
83
11
99
40
21
9
28
1.84
48145--48286
66
2.2
66
84
2
187
42
19
11
27
1.85
48279--48383
33
3.2
33
81
0
120
44
19
9
26
1.81
49430--49469
21
1.9
21
94
0
71
22
32
7
37
1.82
52752--52787
17
2.1
17
100
0
72
44
19
11
25
1.83
52696--52842
79
1.9
78
95
1
267
42
16
10
29
1.82
57332--57381
22
2.4
21
77
9
57
44
4
50
2
1.32
59943--59976
2
17.0
2
100
0
68
50
0
0
50
1.00
60023--60103
41
2.0
41
90
4
128
41
17
11
29
1.84
60460--60490
13
2.4
13
94
0
53
32
6
48
12
1.67
60509--60534
2
13.0
2
100
0
52
50
0
0
50
1.00
61940--62884
451
2.1
443
90
5
1475
42
13
14
29
1.84
66162--66307
32
4.5
32
85
7
170
11
36
40
11
1.78
67038--67106
31
2.2
31
89
0
102
30
17
4
47
1.67
67425--67453
6
4.8
6
100
0
58
82
0
0
17
0.66
71494--71619
32
3.9
30
79
12
110
12
37
38
11
1.80

Tables:   1

The End!