genome.fa.s13884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013884.1 Corchorus capsularis cultivar CVL-1 contig13905, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42595

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2537--2646	53	2.1	53	94	0	193	30	41	9	19	1.82
10066--10272	32	6.5	32	93	0	342	16	41	27	14	1.87
10725--10844	60	2.0	60	95	0	213	35	19	10	35	1.85
20802--20865	33	1.9	33	90	6	103	20	18	40	20	1.91
20799--20884	33	2.9	29	79	17	95	19	18	41	19	1.90
23064--23181	59	2.0	59	100	0	236	35	18	11	33	1.88
23966--24010	15	3.0	15	93	0	72	13	44	26	15	1.83
24051--24172	26	4.7	26	78	11	133	29	38	13	18	1.89
24051--24172	53	2.3	52	88	4	174	29	38	13	18	1.89
27850--28229	128	3.0	128	90	1	573	32	26	27	14	1.94
29604--29785	44	4.1	44	81	2	213	46	23	15	14	1.83
29608--29861	88	3.0	86	85	4	277	44	25	14	15	1.85
29612--29934	40	7.8	40	71	8	180	42	26	15	16	1.87
29612--29965	80	4.3	80	81	5	260	42	26	15	14	1.86
31366--31582	44	5.0	44	96	0	375	43	25	15	15	1.86
31366--31611	132	1.9	132	85	3	343	45	24	15	15	1.84
31770--31987	38	5.8	37	90	3	339	28	31	22	16	1.96
31770--31987	75	2.9	75	91	2	341	28	31	22	16	1.96
32175--32291	61	1.9	60	89	1	180	29	28	19	22	1.98
32694--32723	15	2.0	15	93	0	51	13	50	26	10	1.73
32641--32870	115	2.0	115	95	0	415	22	33	25	18	1.96
32879--33000	26	4.7	26	77	11	124	29	38	13	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32879--33000	53	2.3	52	88	4	174	29	38	13	18	1.89
35229--35256	14	2.0	14	100	0	56	57	7	7	28	1.52
37166--37215	10	5.3	10	84	15	63	42	0	0	58	0.98
37167--37213	2	25.5	2	79	16	57	42	0	0	57	0.98
37336--37373	2	19.0	2	100	0	76	50	0	0	50	1.00
39901--40056	78	2.0	78	86	2	215	32	19	25	23	1.98
41767--41797	12	2.7	12	95	5	55	61	9	9	19	1.54

Tables:   1

The End!