Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013888.1 Corchorus capsularis cultivar CVL-1 contig13909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138463

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
51
0
48
0
1.00
7696--7729
18
1.9
18
94
5
61
41
0
14
44
1.45
11469--11507
12
3.2
12
82
13
53
10
28
48
12
1.74
20842--20881
1
40.0
1
100
0
80
0
0
0
100
0.00
28873--28903
7
4.4
7
100
0
62
29
0
29
41
1.56
44789--44832
21
2.1
21
86
0
61
18
34
9
38
1.82
45029--45133
32
3.2
33
78
2
115
12
34
40
13
1.82
50223--50269
21
2.2
21
80
0
58
29
17
12
40
1.86
53859--57356
325
10.9
321
75
9
2788
34
15
16
33
1.90
53859--57055
959
3.3
948
88
3
4576
34
14
16
33
1.90
57103--57618
262
2.0
262
85
4
711
34
15
17
32
1.91
76020--76056
6
6.2
6
100
0
74
18
0
64
16
1.29
77117--77199
33
2.5
33
83
11
107
22
13
8
55
1.65
97597--97665
35
2.0
35
100
0
138
23
15
26
34
1.95
101940--101970
7
4.4
7
95
0
53
64
35
0
0
0.94
103811--103847
16
2.2
17
86
13
51
51
13
10
24
1.73
108097--108121
12
2.1
12
100
0
50
48
0
0
52
1.00
115180--115215
2
18.0
2
100
0
72
50
0
0
50
1.00
120343--120429
42
2.1
42
97
0
165
45
6
4
42
1.51

Tables:   1

The End!