Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013891.1 Corchorus capsularis cultivar CVL-1 contig13912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23302

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2369--2470
31
3.4
31
72
5
91
31
21
12
34
1.91
2575--2638
31
2.1
31
85
2
85
37
14
15
32
1.87
4544--4577
12
2.8
12
90
0
59
50
2
0
47
1.16
4722--4853
31
4.3
31
80
5
153
35
13
19
31
1.91
6468--6493
3
8.7
3
100
0
52
34
0
0
65
0.93
6491--6519
2
14.5
2
100
0
58
48
0
0
51
1.00
11927--14602
659
4.1
642
77
10
2147
36
15
14
33
1.88
12109--14313
326
6.7
319
76
11
831
37
15
13
33
1.87
14514--14709
95
2.0
97
90
2
306
30
15
11
43
1.81
15284--15630
179
1.9
178
91
1
561
38
14
13
33
1.85
15460--16872
330
4.3
327
77
9
1204
37
16
13
33
1.88
16724--16748
2
12.5
2
100
0
50
48
0
0
52
1.00
17882--17911
15
1.9
16
93
6
53
53
3
0
43
1.17
18017--18074
26
2.2
26
81
12
73
63
5
6
24
1.40
18171--18225
11
5.5
11
75
20
50
32
0
23
43
1.54
18179--18225
15
3.1
16
84
9
62
31
0
23
44
1.54
20078--20159
41
2.0
41
87
0
119
40
18
10
30
1.85
20261--20292
13
2.5
13
94
0
55
31
6
50
12
1.65
22605--22633
12
2.4
12
100
0
58
34
10
13
41
1.79

Tables:   1

The End!