Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013900.1 Corchorus capsularis cultivar CVL-1 contig13921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36171

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
584--660
32
2.4
33
82
6
97
33
16
20
28
1.95
12273--12338
32
2.1
32
94
2
116
25
18
4
51
1.65
12349--12401
19
2.8
19
77
5
54
37
5
0
56
1.23
12465--12557
22
4.2
22
86
5
134
35
15
16
33
1.89
12451--12549
44
2.2
44
87
3
137
37
15
16
31
1.89
12480--12611
22
5.9
22
83
3
111
33
10
18
37
1.86
12650--12780
22
6.0
22
68
11
81
35
10
19
35
1.86
12825--12949
22
5.6
23
77
16
106
41
9
10
38
1.72
12865--12903
21
2.0
19
85
14
53
46
5
7
41
1.55
12932--13001
19
3.6
19
86
1
95
41
10
24
24
1.85
12995--13509
22
23.7
22
68
12
122
38
9
14
37
1.79
12839--13263
44
10.0
44
69
16
202
39
8
15
35
1.79
29914--30325
217
1.9
217
90
0
653
26
18
18
36
1.94
31556--31585
2
15.0
2
92
0
51
50
3
0
46
1.18
31752--31801
25
2.0
25
96
0
91
42
8
16
34
1.77
33866--33949
41
2.0
42
95
2
152
40
5
7
46
1.56
34257--34294
11
3.5
11
89
10
51
39
0
2
57
1.12
34496--34522
14
1.9
14
100
0
54
44
3
7
44
1.49
35216--35531
166
1.9
166
87
5
469
30
17
14
37
1.90
35836--35866
2
16.0
2
93
6
55
48
0
0
51
1.00

Tables:   1

The End!