genome.fa.s13903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013903.1 Corchorus capsularis cultivar CVL-1 contig13924, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64012

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3377--3539	31	5.5	31	77	12	155	17	23	26	32	1.96
3428--3530	53	1.9	53	90	0	161	16	20	27	35	1.94
5264--5454	38	5.0	38	92	0	310	23	19	36	20	1.95
5453--5489	6	6.2	6	87	0	56	18	2	32	45	1.64
19478--19504	6	4.5	6	100	0	54	0	14	0	85	0.61
22881--22951	8	9.2	8	72	14	60	36	4	14	45	1.64
22877--22920	15	2.5	19	72	27	60	38	6	9	45	1.63
22884--22951	15	4.5	15	80	9	84	36	4	14	44	1.66
28819--28947	64	2.0	64	96	0	240	25	24	20	29	1.99
31990--32057	27	2.5	28	88	7	104	30	13	22	33	1.92
33736--33794	30	2.0	30	90	6	93	47	15	3	33	1.62
33810--33840	2	15.5	2	100	0	62	48	0	0	51	1.00
35353--35399	22	2.1	22	84	7	60	31	12	23	31	1.92
37030--37174	36	4.2	36	83	6	158	30	19	8	41	1.82
37037--37141	35	2.9	36	86	8	135	28	19	7	44	1.77
37114--37179	32	2.1	32	94	0	114	30	24	9	36	1.86
37183--37356	35	4.9	35	81	3	114	22	16	13	47	1.81
37183--37619	37	11.9	35	85	5	241	23	17	13	46	1.83
37237--37621	37	10.4	37	87	5	426	23	17	12	46	1.83
37326--37624	75	4.0	75	94	1	494	23	18	13	45	1.83
37308--37624	37	8.5	37	92	2	485	23	17	12	45	1.84
37624--37883	37	7.1	37	89	2	350	26	18	8	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37787--37998	75	2.9	70	82	8	248	25	16	10	47	1.79
40443--40526	7	11.0	7	70	16	51	8	19	36	35	1.82
40419--40622	16	12.4	16	73	12	155	10	21	34	33	1.88
40420--40606	32	5.7	32	82	10	209	10	20	34	34	1.88
40411--40577	70	2.4	70	93	2	280	10	20	34	34	1.87
40848--40929	42	2.0	42	92	0	137	35	6	19	39	1.77
41004--41033	15	1.9	16	93	6	53	46	40	13	0	1.43
41102--41223	16	7.7	16	83	1	147	50	32	13	3	1.59
41103--41223	32	3.8	32	93	2	208	50	33	13	3	1.57
41103--41223	63	1.9	64	93	1	208	50	33	13	3	1.57
41378--41463	15	5.5	15	79	8	91	39	33	8	18	1.80
41371--41478	32	3.4	31	90	2	162	38	37	9	14	1.79
42028--42100	32	2.3	32	87	0	101	9	23	35	31	1.87
42028--42100	16	4.6	16	79	6	85	9	23	35	31	1.87
42040--42109	32	2.2	32	84	0	86	8	22	41	27	1.83
43059--43089	15	2.0	16	93	6	55	19	22	12	45	1.84
47197--47241	16	3.0	16	75	12	51	8	51	11	28	1.68
52169--52207	18	2.2	18	95	0	69	43	28	0	28	1.55
57956--58005	14	3.5	14	86	8	57	40	8	14	38	1.75
58697--58733	14	2.7	14	91	4	58	83	0	10	5	0.79
60376--60770	65	6.0	65	75	7	301	36	14	22	26	1.93
61151--61440	98	2.9	99	84	2	359	36	12	25	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61139--61440	50	6.1	50	81	2	322	37	11	25	25	1.90
61500--61620	56	2.2	56	86	3	163	26	20	14	38	1.91

Tables:   1

The End!