Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013904.1 Corchorus capsularis cultivar CVL-1 contig13925, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17663

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
554--587
15
2.3
15
89
0
50
20
8
5
64
1.43
1938--1977
21
1.9
21
84
0
53
45
22
20
12
1.84
12836--12863
2
14.0
2
100
0
56
50
50
0
0
1.00
13191--13222
13
2.5
13
100
0
64
62
0
21
15
1.32
14343--14420
27
2.8
28
81
9
72
15
21
2
60
1.47
14474--14542
35
1.9
36
94
2
122
26
20
4
49
1.67
14509--14577
22
3.1
22
81
10
95
20
18
4
56
1.58
14550--14611
30
2.0
32
84
6
83
16
14
1
67
1.31
14581--14662
27
3.2
26
79
10
87
19
18
1
60
1.42
14522--14694
82
2.2
76
82
11
199
19
17
2
61
1.45
14550--14763
28
7.7
27
76
13
143
20
17
3
58
1.52
14607--14763
56
2.9
54
82
8
183
21
17
3
56
1.57
14785--14875
37
2.5
36
82
8
121
23
18
2
56
1.53
14893--14974
20
4.2
19
79
11
69
20
23
4
51
1.67
16668--16784
59
2.0
59
94
0
207
39
7
19
33
1.80

Tables:   1

The End!