genome.fa.s13905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013905.1 Corchorus capsularis cultivar CVL-1 contig13926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118535

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87--125	20	2.0	20	94	0	69	41	23	10	25	1.86
266--299	14	2.4	14	95	0	59	50	14	11	23	1.76
627--698	27	2.7	27	84	0	90	50	26	9	13	1.73
1134--1687	70	8.1	69	86	3	662	28	18	27	25	1.98
1134--1687	139	4.1	137	85	4	705	28	18	27	25	1.98
1130--1687	274	2.0	272	85	5	761	28	18	27	25	1.98
3094--3150	21	2.7	21	75	0	60	35	10	10	43	1.74
3610--3647	19	2.1	18	90	5	58	0	15	0	84	0.63
4287--4335	14	3.6	13	79	17	55	38	14	8	38	1.76
6894--6937	18	2.5	18	79	17	56	22	22	2	52	1.58
7085--7195	22	5.4	22	69	21	89	22	21	3	52	1.62
7092--7160	35	1.9	36	91	2	113	26	23	4	46	1.71
7148--7278	27	5.1	27	76	15	120	18	18	3	60	1.49
7127--7278	53	3.0	51	76	15	124	19	18	3	59	1.52
7168--7339	28	6.2	28	75	12	117	20	16	2	59	1.49
7148--7310	81	2.1	76	84	10	204	19	17	3	60	1.48
7310--7415	38	2.9	37	79	8	117	25	20	2	50	1.61
7433--7514	20	4.2	19	79	11	69	20	23	4	51	1.67
9205--9315	58	1.9	57	96	1	204	39	8	20	31	1.82
11060--11098	20	2.0	20	94	0	69	41	23	10	25	1.86
11239--11272	14	2.4	14	95	0	59	50	14	11	23	1.76
11598--11670	28	2.6	28	82	2	85	52	24	9	13	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20327--20404	38	2.1	38	95	0	138	29	16	20	33	1.95
20830--20888	16	3.8	16	78	13	68	6	11	38	42	1.68
22472--22560	45	2.0	45	93	0	151	26	20	19	33	1.96
27660--28810	36	32.0	36	83	6	1168	26	19	10	44	1.82
27660--28810	541	2.1	534	82	7	1400	26	19	10	44	1.82
31742--31771	14	2.1	14	93	0	51	23	6	26	43	1.78
32419--32511	46	2.0	46	91	0	150	36	10	22	30	1.88
32704--32731	13	2.2	13	100	0	56	39	14	0	46	1.44
33179--33220	15	2.8	16	75	17	54	50	0	0	50	1.00
33197--33226	10	3.1	10	95	4	53	50	0	0	50	1.00
33179--33238	20	3.0	20	81	13	63	48	0	0	51	1.00
34761--34855	6	14.5	6	69	27	52	4	16	45	33	1.67
34761--34851	16	5.7	16	83	5	85	4	16	45	34	1.67
34823--34874	17	3.1	17	75	8	61	1	25	50	23	1.60
34822--34876	23	2.4	23	90	0	83	1	25	47	25	1.62
35617--35682	6	11.8	6	76	15	70	3	16	53	27	1.58
35620--35682	22	2.8	22	87	2	90	3	15	53	26	1.57
37057--37088	16	2.0	16	93	0	55	53	6	0	40	1.26
37673--37722	20	2.4	22	86	6	68	58	6	0	36	1.23
37770--37830	3	20.3	3	77	12	63	60	3	0	36	1.13
37745--37841	30	3.1	30	81	10	99	56	6	0	37	1.24
38658--38835	99	1.8	99	85	2	243	31	16	10	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40353--40391	9	4.3	9	83	0	51	43	2	0	53	1.14
52923--52981	15	3.9	15	88	0	82	11	22	23	42	1.86
55168--55206	9	4.3	9	83	0	51	43	2	0	53	1.14
62590--62665	36	2.1	36	92	0	125	26	38	10	25	1.88
62598--62680	36	2.3	36	89	0	121	22	44	9	22	1.82
65453--65895	60	7.6	59	81	8	412	38	13	22	26	1.91
65555--65895	113	2.9	114	81	3	351	37	12	22	26	1.91
71862--72333	62	7.6	62	86	0	588	36	15	22	24	1.94
72062--72163	34	3.2	32	66	25	81	40	18	19	21	1.92
73339--73371	15	2.3	15	89	5	50	57	6	9	27	1.53
73426--73467	13	3.3	13	83	3	59	61	11	9	16	1.55
73415--73467	25	2.1	25	93	6	90	58	11	11	18	1.62
80506--80538	15	2.3	15	89	5	50	57	6	9	27	1.53
80593--80634	13	3.3	13	80	3	50	61	11	7	19	1.52
80582--80634	25	2.1	25	89	6	81	58	11	9	20	1.60
82475--82504	5	6.0	5	96	0	51	20	3	0	76	0.92
83231--83268	18	2.1	18	90	0	58	44	15	31	7	1.75
87828--88023	98	2.0	98	85	2	268	28	18	16	36	1.93
94596--94676	34	2.4	34	82	15	105	33	2	19	44	1.64
96007--96059	11	4.8	11	75	9	54	77	16	5	0	0.96
98567--98614	20	2.3	21	89	3	71	66	6	8	18	1.39
99979--100010	11	2.9	11	95	0	55	40	18	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99958--99996	19	2.1	18	85	4	51	30	20	5	43	1.73
100883--100927	24	1.9	23	81	4	54	17	11	35	35	1.86
101309--101607	64	4.7	63	85	5	359	26	24	21	27	1.99
101309--101607	128	2.3	129	88	3	435	26	24	21	27	1.99
101971--102003	18	1.9	17	88	11	50	36	24	0	39	1.56
102623--102860	84	3.0	77	86	8	325	26	22	13	37	1.91
102697--103876	84	14.6	84	72	15	497	26	23	13	36	1.92
102820--102910	48	1.9	47	86	2	128	24	28	7	39	1.83
102921--103006	45	1.9	45	95	0	154	31	20	8	39	1.82
102965--103655	76	8.9	77	77	10	462	26	23	12	37	1.90
102966--103396	77	5.5	76	80	11	383	27	23	12	36	1.91
102966--103250	153	1.9	153	89	1	446	27	24	11	36	1.90
103103--103662	161	3.5	160	75	14	466	26	22	13	37	1.91
103045--103662	237	2.6	237	84	5	734	26	22	12	38	1.90
103642--103872	74	2.9	80	82	10	294	25	23	17	32	1.97
103734--104223	92	5.5	83	76	11	284	24	23	16	35	1.95
103799--104223	92	4.6	92	79	10	454	24	23	17	35	1.95
103905--104095	100	1.9	100	88	2	285	24	21	15	38	1.92
104008--104194	84	2.2	84	88	1	277	22	24	16	36	1.94
104092--104271	92	2.0	92	81	8	215	24	26	14	34	1.94
103734--104271	276	2.0	274	82	2	668	24	23	15	36	1.94
104215--104729	77	6.7	75	83	5	570	26	21	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104215--104729	153	3.4	153	86	3	621	26	21	13	38	1.90
104192--104729	230	2.3	230	82	7	664	26	21	13	37	1.91
111832--111873	20	2.1	20	86	0	57	54	19	9	16	1.69
112214--112275	22	2.7	23	76	14	67	32	19	9	38	1.84
114378--114431	14	3.9	14	75	22	51	72	1	24	1	1.05
114497--114534	13	2.9	14	84	7	53	42	10	10	36	1.74
117944--118023	37	2.2	35	82	10	90	25	25	17	32	1.97
118180--118473	48	6.2	48	85	3	364	20	30	15	33	1.93
118194--118481	144	2.0	140	87	2	414	20	30	16	32	1.94

Tables:   1

The End!