Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013908.1 Corchorus capsularis cultivar CVL-1 contig13929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6385
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31


Found at i:4819 original size:21 final size:21

Alignment explanation


    Indices: 4795--4836  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4785 ATGCGATGGT

                                 
       4795 GCGGCTACTCCATACTTTGGC
          1 GCGGCTACTCCATACTTTGGC

                  *      *       
       4816 GCGGCTTCTCCATGCTTTGGC
          1 GCGGCTACTCCATACTTTGGC

       4837 CGGTCATATG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.10, C:0.33, G:0.26, T:0.31


Consensus pattern (21 bp):   
GCGGCTACTCCATACTTTGGC
Done.