genome.fa.s13910.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013910.1 Corchorus capsularis cultivar CVL-1 contig13931, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78041

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327--1371	13	3.5	13	78	3	56	20	11	11	57	1.63
1319--1371	25	2.1	25	89	6	81	18	9	11	60	1.57
1415--1447	15	2.3	15	89	5	50	27	9	6	57	1.53
3059--3145	42	2.1	42	91	0	138	20	43	26	9	1.82
3098--3128	12	2.6	12	100	0	62	16	41	32	9	1.80
10868--10915	15	3.2	15	75	0	51	18	25	35	20	1.95
13425--13477	13	4.1	13	78	7	54	62	1	3	32	1.24
13544--13593	27	1.9	25	84	15	66	46	2	0	52	1.12
13556--13610	19	2.9	18	81	10	65	49	0	1	49	1.11
17038--17298	130	2.0	130	100	0	522	44	8	9	37	1.68
17488--17530	20	2.1	21	86	4	61	39	20	18	20	1.93
17888--17918	12	2.6	12	100	0	62	51	32	16	0	1.44
18834--19728	435	2.1	434	81	4	1036	41	12	14	31	1.84
25772--25825	27	1.9	27	85	7	72	53	9	20	16	1.70
29648--29721	26	2.8	27	81	6	89	37	27	18	16	1.92
29648--29729	27	3.1	26	79	10	87	36	25	20	17	1.94
33070--33111	22	1.9	22	85	0	57	28	23	23	23	2.00
39100--39151	27	1.9	27	84	7	70	17	19	9	53	1.70
40645--40695	21	2.4	21	73	0	57	5	21	41	31	1.77
49610--49642	2	16.5	2	100	0	66	48	0	0	51	1.00
54584--54859	72	3.8	72	83	4	342	33	18	27	20	1.96
59589--59631	2	21.5	2	85	0	59	48	6	0	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67303--67333	15	2.1	15	93	0	53	29	25	6	38	1.81
69745--69823	35	2.3	35	90	0	122	21	26	13	37	1.91
72459--72500	2	20.5	2	90	9	59	47	0	4	47	1.23
72678--72710	5	7.0	5	93	6	52	84	0	15	0	0.61
72974--72999	2	13.0	2	100	0	52	0	50	0	50	1.00
75023--75060	20	2.0	18	90	10	58	2	13	5	78	1.02

Tables:   1

The End!