Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013911.1 Corchorus capsularis cultivar CVL-1 contig13932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45985
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Found at i:617 original size:2 final size:2
Alignment explanation
Indices: 610--638 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
600 TGCAGTAACT
610 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
639 GTGTGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2423 original size:53 final size:53
Alignment explanation
Indices: 2343--2505 Score: 301
Period size: 53 Copynumber: 3.1 Consensus size: 53
2333 TTACTAGGAA
*
2343 AATTCTTCCCCAAAGAAATCCTTATTTTTCTCCTATTTCTATCAAGTAAGATC
1 AATTCTTCCCCAAAGAAATCCTTATTTTTCTCCTATTTCTATCAAGCAAGATC
2396 AATTCTTCCCCAAAGAAATCCTTATTTTTCTCCTATTTCTATCAAGCAAGATC
1 AATTCTTCCCCAAAGAAATCCTTATTTTTCTCCTATTTCTATCAAGCAAGATC
2449 AATTCTTCCCCAAA-AATATCCTTATTTTTCTCCTATTTCTATCAAGCAAGATC
1 AATTCTTCCCCAAAGAA-ATCCTTATTTTTCTCCTATTTCTATCAAGCAAGATC
2502 AATT
1 AATT
2506 TACAAATAAG
Statistics
Matches: 108, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
52 2 0.02
53 106 0.98
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (53 bp):
AATTCTTCCCCAAAGAAATCCTTATTTTTCTCCTATTTCTATCAAGCAAGATC
Found at i:3035 original size:16 final size:16
Alignment explanation
Indices: 3016--3075 Score: 72
Period size: 16 Copynumber: 3.8 Consensus size: 16
3006 AAATAACTTT
3016 TTAAATAAAAAATAAA
1 TTAAATAAAAAATAAA
*
3032 TTAAATAGAAAATAAA
1 TTAAATAAAAAATAAA
3048 TT-AATAGAAAAA-AAA
1 TTAAATA-AAAAATAAA
3063 TTCAAA-AAAAAAT
1 TT-AAATAAAAAAT
3076 TCACGTGCCG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 14 0.37
16 22 0.58
17 2 0.05
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (16 bp):
TTAAATAAAAAATAAA
Found at i:3055 original size:15 final size:16
Alignment explanation
Indices: 3016--3064 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
3006 AAATAACTTT
*
3016 TTAAATAAAAAATAAA
1 TTAAATAGAAAATAAA
3032 TTAAATAGAAAATAAA
1 TTAAATAGAAAATAAA
*
3048 TT-AATAGAAAAAAAA
1 TTAAATAGAAAATAAA
3063 TT
1 TT
3065 CAAAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 14 0.45
16 17 0.55
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (16 bp):
TTAAATAGAAAATAAA
Found at i:4375 original size:2 final size:2
Alignment explanation
Indices: 4368--4407 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
4358 TATGATTAAG
*
4368 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4408 TTTTTATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:5710 original size:3 final size:3
Alignment explanation
Indices: 5698--5814 Score: 209
Period size: 3 Copynumber: 39.3 Consensus size: 3
5688 GCTCACGGAA
* *
5698 GAT G-T GAT GAT GAT GAT AAC GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
5745 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
5793 GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT G
5815 GGGGAATTGA
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
2 2 0.02
3 107 0.98
ACGTcount: A:0.33, C:0.01, G:0.33, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:6907 original size:14 final size:12
Alignment explanation
Indices: 6877--6929 Score: 88
Period size: 12 Copynumber: 4.3 Consensus size: 12
6867 TCGATACCTT
6877 GATATATCCGTC
1 GATATATCCGTC
*
6889 GATATATTCGTC
1 GATATATCCGTC
6901 GATATATCCGTTC
1 GATATATCCG-TC
6914 GATATATCCGTC
1 GATATATCCGTC
6926 GATA
1 GATA
6930 CTTGTATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
12 26 0.68
13 12 0.32
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (12 bp):
GATATATCCGTC
Found at i:6925 original size:25 final size:24
Alignment explanation
Indices: 6877--6929 Score: 88
Period size: 25 Copynumber: 2.2 Consensus size: 24
6867 TCGATACCTT
*
6877 GATATATCCGTCGATATATTCGTC
1 GATATATCCGTCGATATATCCGTC
6901 GATATATCCGTTCGATATATCCGTC
1 GATATATCCG-TCGATATATCCGTC
6926 GATA
1 GATA
6930 CTTGTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (24 bp):
GATATATCCGTCGATATATCCGTC
Found at i:7123 original size:17 final size:17
Alignment explanation
Indices: 7096--7133 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
7086 GGAGCCAGCA
7096 TTTTGTTTTTTTTTGTGC
1 TTTTGTTTTTTTTTGT-C
7114 TTTT-TTTTTTTTTGTC
1 TTTTGTTTTTTTTTGTC
7130 TTTT
1 TTTT
7134 CTCACTTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.25
17 11 0.55
18 4 0.20
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (17 bp):
TTTTGTTTTTTTTTGTC
Found at i:8283 original size:105 final size:105
Alignment explanation
Indices: 8121--8494 Score: 508
Period size: 105 Copynumber: 3.6 Consensus size: 105
8111 TCTAACTCTT
* * * * * **
8121 AAAATAAAATTTTAATTT-GCGCAAAACTTTGTGAAGT-AGTTATATATTTTATTTCTAAAACTT
1 AAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATAAGTTTTATATTTTATTTCTAAAACCC
8184 TATAACAATATTATTAAATTTGGAATTTACCCTTAAAATA
66 TATAACAATATTATTAAATTTGGAATTTACCCTTAAAATA
* * *
8224 AAAATAAAATTTTAATTTGGGGCTAAATTTAATGAAATAAGTTTTGTATTTTATTTCTAAAACCC
1 AAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATAAGTTTTATATTTTATTTCTAAAACCC
*
8289 TATAATAATATTATT-AATTATGGAATTTACCCTTAAAATA
66 TATAACAATATTATTAAATT-TGGAATTTACCCTTAAAATA
*
8329 AAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATAAGTTTTGTATTTTATTTCTAAAACCC
1 AAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATAAGTTTTATATTTTATTTCTAAAACCC
* * *
8394 TATAACAATAAATTATTAATTTTGAAAGTTACCCTTAAAAT-
66 TATAACAAT--ATTATTAAATTTGGAATTTACCCTTAAAATA
*** *
8435 -AAAT-TTTTTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTATATTTTATTTCTAAAA
1 AAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATAAGTTTTATATTTTATTTCTAAAA
8495 GTCTATAATA
Statistics
Matches: 243, Mismatches: 22, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
103 18 0.07
104 68 0.28
105 131 0.54
107 23 0.09
108 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (105 bp):
AAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATAAGTTTTATATTTTATTTCTAAAACCC
TATAACAATATTATTAAATTTGGAATTTACCCTTAAAATA
Found at i:8487 original size:209 final size:207
Alignment explanation
Indices: 8121--8505 Score: 531
Period size: 209 Copynumber: 1.8 Consensus size: 207
8111 TCTAACTCTT
* * **
8121 AAAATAAAATTTTAATTTGCGCAAAACTTTGTGAAGTAGTTATATATTTTATTTCTAAAACTTTA
1 AAAATAAAATTTTAATTTGCGCAAAACTTAGTGAAATAGTTATATATTTTATTTCTAAAACCCTA
* *
8186 TAACAATATTATTAAATTTGGAATTTACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAA
66 TAACAATATTATTAAATTTGAAAGTTACCCTTAAAAT-AAAATAAAATTTTAATTTGGGGCTAAA
* *
8251 TTTAATGAAATAAGTTTTGTATTTTATTTCTAAAACCCTATAATAATATTATTAATTATGGAATT
130 CTTAATGAAATAAGTTTTATATTTTATTTCTAAAACCCTATAATAATATTATTAATTATGGAATT
8316 TACCCTTAAAATA
195 TACCCTTAAAATA
* * * *
8329 AAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATAAGTTTTGTATTTTATTTCTAAAACCC
1 AAAATAAAATTTTAATTT-GCGCAAAACTTAGTGAAAT-AGTTATATATTTTATTTCTAAAACCC
* ***
8394 TATAACAATAAATTATTAATTTTGAAAGTTACCCTTAAAAT-AAAT-TTTTTTTAATTTGGGGCT
64 TATAACAAT--ATTATTAAATTTGAAAGTTACCCTTAAAATAAAATAAAATTTTAATTTGGGGCT
* * **
8457 AAACTTAGTGAAATTAGTTTTATATTTTATTTCTAAAAGTCTATAATAA
127 AAACTTAATGAAATAAGTTTTATATTTTATTTCTAAAACCCTATAATAA
8506 AAAAAACCTT
Statistics
Matches: 153, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
208 18 0.12
209 73 0.48
210 35 0.23
212 27 0.18
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (207 bp):
AAAATAAAATTTTAATTTGCGCAAAACTTAGTGAAATAGTTATATATTTTATTTCTAAAACCCTA
TAACAATATTATTAAATTTGAAAGTTACCCTTAAAATAAAATAAAATTTTAATTTGGGGCTAAAC
TTAATGAAATAAGTTTTATATTTTATTTCTAAAACCCTATAATAATATTATTAATTATGGAATTT
ACCCTTAAAATA
Found at i:8791 original size:17 final size:17
Alignment explanation
Indices: 8761--8817 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
8751 GAATCACCCC
8761 CTAA-ATCACTAGTGAT
1 CTAAGATCACTAGTGAT
*
8777 CTAAGATCACCAGTGAT
1 CTAAGATCACTAGTGAT
*
8794 GC-AAGATCACTGGTGAT
1 -CTAAGATCACTAGTGAT
*
8811 CAAAGAT
1 CTAAGAT
8818 TACATGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 5 0.14
17 29 0.83
18 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (17 bp):
CTAAGATCACTAGTGAT
Found at i:14308 original size:18 final size:18
Alignment explanation
Indices: 14285--14319 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14275 ATATTCTAAT
14285 ATTATTGTTCTTTATAAA
1 ATTATTGTTCTTTATAAA
14303 ATTATTGTTCTTTATAA
1 ATTATTGTTCTTTATAA
14320 TATCTGTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (18 bp):
ATTATTGTTCTTTATAAA
Found at i:15266 original size:15 final size:16
Alignment explanation
Indices: 15244--15281 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
15234 TGCTCAAATG
15244 TCGGGTC-ATTTGGGT
1 TCGGGTCAATTTGGGT
* *
15259 TTGGGTCAATTTTGGT
1 TCGGGTCAATTTGGGT
15275 TCGGGTC
1 TCGGGTC
15282 TTTTTCAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.08, C:0.13, G:0.37, T:0.42
Consensus pattern (16 bp):
TCGGGTCAATTTGGGT
Found at i:19078 original size:128 final size:128
Alignment explanation
Indices: 18848--19106 Score: 482
Period size: 128 Copynumber: 2.0 Consensus size: 128
18838 GTCTATTCAA
18848 AAACAGATATAATGGATGATCTCTGCGGCAAATGCGAAGTATGGTCCTCGTTCGTAGATTTTTCA
1 AAACAGATATAATGGATGATCTCTGCGGCAAATGCGAAGTATGGTCCTCGTTCGTAGATTTTTCA
*
18913 CAATAAATCCCCATTAATGAAATTCCACAAAATAGTTATTATCTTTAGCAAACTTTTAAACAG
66 CAATAAATCCCCATTAATGAAATTCCACAAAACAGTTATTATCTTTAGCAAACTTTTAAACAG
* *
18976 AAACAGATATAATGGATGATCTCTGCGGCAAATGTGAAGTATGGTCCTTGTTCGTAGATTTTTCA
1 AAACAGATATAATGGATGATCTCTGCGGCAAATGCGAAGTATGGTCCTCGTTCGTAGATTTTTCA
*
19041 CAATAAATCCCCATTAATGAAATTCCACAAAACAGTTATTATCTTTAGCAAACTTTTAAATAG
66 CAATAAATCCCCATTAATGAAATTCCACAAAACAGTTATTATCTTTAGCAAACTTTTAAACAG
19104 AAA
1 AAA
19107 TCAAATTCTT
Statistics
Matches: 127, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 127 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (128 bp):
AAACAGATATAATGGATGATCTCTGCGGCAAATGCGAAGTATGGTCCTCGTTCGTAGATTTTTCA
CAATAAATCCCCATTAATGAAATTCCACAAAACAGTTATTATCTTTAGCAAACTTTTAAACAG
Found at i:19732 original size:258 final size:258
Alignment explanation
Indices: 19275--19792 Score: 883
Period size: 258 Copynumber: 2.0 Consensus size: 258
19265 GATTACCAGC
* *
19275 GGTATTTGTCATATGAGAGGAGGCACCCGTGTCCATCTACCATGATGGATTAAATGAATCATCAA
1 GGTATTTGTCATATGAGAGGACGCACCCGTGTCCATATACCATGATGGATTAAATGAATCATCAA
* *
19340 GAGATAGACCAACCAACTGAGAAGCAGGATCAGATTGTGTACCATAAGAACAATTAACAGCAATG
66 GAGATAGACCAACAAACTGAGAAGCAGGATCAGATTGTGTACCATAAGAACAATTAACAGCAACG
*
19405 TGACCAGGGTTGCCACAATAATAGCAGTATCCCGAAAATTGGGTAGGTGCTTGTGGACAAAGCAG
131 TGACCAGGGTTGCCACAATAATAGCAATATCCCGAAAATTGGGTAGGTGCTTGTGGACAAAGCAG
* * *
19470 TGGTGAAGTACCAAGAATGCCTCGGCCTCGCCAAGTTTGAGGTCTCGGGTTTGACATCCAAGG
196 TGGTGAAGGACCAAGAATGCCTCGGCCTCGCCAAGCTTGAGGTCTCGAGTTTGACATCCAAGG
* *
19533 GGTATTTGTCATATGAGAGGACGCCCCCGTGTCCATATACCATGATGGATTAAATGAATCATTAA
1 GGTATTTGTCATATGAGAGGACGCACCCGTGTCCATATACCATGATGGATTAAATGAATCATCAA
* * *
19598 GAGATAGACCAGCAAACTGAGAAGTAGGATCAGATTGTGTACCATAAGAACAATTAGCAGCAACG
66 GAGATAGACCAACAAACTGAGAAGCAGGATCAGATTGTGTACCATAAGAACAATTAACAGCAACG
***
19663 TGACCAGGGTTGCCACAATAATAGCAATATCCCGAAAATTGGGTAGGTGCTTGTGGATGTAGCAG
131 TGACCAGGGTTGCCACAATAATAGCAATATCCCGAAAATTGGGTAGGTGCTTGTGGACAAAGCAG
*
19728 TGGTGAAGGACCAAGAATTCCTCGGCCTCGCCAAGCTTGAGGTCTCGAGTTTGACATCCAAGG
196 TGGTGAAGGACCAAGAATGCCTCGGCCTCGCCAAGCTTGAGGTCTCGAGTTTGACATCCAAGG
19791 GG
1 GG
19793 ACATATATGA
Statistics
Matches: 243, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
258 243 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.23
Consensus pattern (258 bp):
GGTATTTGTCATATGAGAGGACGCACCCGTGTCCATATACCATGATGGATTAAATGAATCATCAA
GAGATAGACCAACAAACTGAGAAGCAGGATCAGATTGTGTACCATAAGAACAATTAACAGCAACG
TGACCAGGGTTGCCACAATAATAGCAATATCCCGAAAATTGGGTAGGTGCTTGTGGACAAAGCAG
TGGTGAAGGACCAAGAATGCCTCGGCCTCGCCAAGCTTGAGGTCTCGAGTTTGACATCCAAGG
Found at i:22148 original size:2 final size:2
Alignment explanation
Indices: 22141--22168 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22131 TGGTAAACAC
22141 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
22169 TTCTGAGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:32167 original size:20 final size:20
Alignment explanation
Indices: 32129--32168 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32119 ACTTTCAACA
* *
32129 CAATTAATTTCTTCAAAAAT
1 CAATGAATTTCATCAAAAAT
*
32149 CAATGAATTTCATCCAAAAT
1 CAATGAATTTCATCAAAAAT
32169 TGTTCTCTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (20 bp):
CAATGAATTTCATCAAAAAT
Found at i:33661 original size:60 final size:61
Alignment explanation
Indices: 33597--33730 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 61
33587 AAAAACCGAA
** * ** *
33597 ATTAGGG-TTAGAGGGGGATGAAATTGCAAAAATTGAAAGAA-GGGAAAAAGGGA-TTTTGCG
1 ATTAGGGTTTAGAAAGGG-TGAAATCGC-AAAATTGAAAGAACAAGAAAAAGGAATTTTTGCG
33657 ATTAGGGTTTAGAAAGGGTGAAATCGCAAAATTGAAAGAACAAGAAAAAGGAATTTTTGCG
1 ATTAGGGTTTAGAAAGGGTGAAATCGCAAAATTGAAAGAACAAGAAAAAGGAATTTTTGCG
*
33718 ATTTGGTGTTTAG
1 ATTAGG-GTTTAG
33731 GGTTGAAAGG
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
59 13 0.21
60 24 0.38
61 20 0.32
62 6 0.10
ACGTcount: A:0.40, C:0.04, G:0.31, T:0.25
Consensus pattern (61 bp):
ATTAGGGTTTAGAAAGGGTGAAATCGCAAAATTGAAAGAACAAGAAAAAGGAATTTTTGCG
Found at i:40817 original size:73 final size:73
Alignment explanation
Indices: 40698--40841 Score: 270
Period size: 73 Copynumber: 2.0 Consensus size: 73
40688 TTTCTGAAGT
**
40698 AATCCTTAATGAATCTTCTATAGAATCCAGCATGACCCAAGAATGACCTGATATCTCGTGGAGAT
1 AATCCTTAATGAATCTTCTATAGAATCCAGCATGACCCAAGAATGACCTGATATCTCGTACAGAT
40763 TTTGGAGA
66 TTTGGAGA
40771 AATCCTTAATGAATCTTCTATAGAATCCAGCATGACCCAAGAATGACCTGATATCTCGTACAGAT
1 AATCCTTAATGAATCTTCTATAGAATCCAGCATGACCCAAGAATGACCTGATATCTCGTACAGAT
40836 TTTGGA
66 TTTGGA
40842 TAAGGAAGAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (73 bp):
AATCCTTAATGAATCTTCTATAGAATCCAGCATGACCCAAGAATGACCTGATATCTCGTACAGAT
TTTGGAGA
Done.