Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013912.1 Corchorus capsularis cultivar CVL-1 contig13933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2325
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29


Found at i:1138 original size:26 final size:26

Alignment explanation


    Indices: 1109--1160  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1099 TCAAAAATTG

                                      
       1109 GGGAATAAAATATCAATCCAAAAACA
          1 GGGAATAAAATATCAATCCAAAAACA

                                      
       1135 GGGAATAAAATATCAATCCAAAAACA
          1 GGGAATAAAATATCAATCCAAAAACA

       1161 ATCAAATTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15


Consensus pattern (26 bp):   
GGGAATAAAATATCAATCCAAAAACA
Done.